[Bioperl-l] Bio::Tools::Run::Alignment::Clustalw. Alignment doesn't print out in CGI

[Tariq Shafi]

Sean,

Many thanks for your help.

I didn't set my environment variable before. At the top of the script 
therefore what I needed to put was:

use CGI qw(:standard);
use Bio::Seq;
use Bio::SeqIO;
use Bio::Tools::Run::Alignment::Clustalw;

$ENV{CLUSTALDIR} = '/usr/local/clustalw';       # CRUCIAL LINE

$query = new CGI;

print $query->header;
..
etc.

Kind regards

Tariq

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