[Bioperl-l] Bio::Graphics Description layout question

Agrin, Nathan Nathan.Agrin at umassmed.edu
Fri Jul 16 10:19:26 EDT 2004


Thanks for the help,

Using the -key_style=>'right' seems to work on some tests I ran, but as
soon as I feed -key the function " sub { $des =
$feature->each_tag_value('description'), "$description"; } " it stops
working.  I can feed the -key something like sub { return "test" } and
it works fine.  I've been really frustrated trying to deal with this and
any help is appreciated.



-----Original Message-----
From: Roels, Steven [mailto:Steven.Roels at mpi.com] 
Sent: Thursday, July 15, 2004 6:57 PM
To: Agrin, Nathan; bioperl-l at bioperl.org
Subject: RE: [Bioperl-l] Bio::Graphics Description layout question


Nathan,

I believe you need:

-key_style=>'right'

as an option to

Bio::Graphics::Panel->new()

But then you need to have:

-pad_right=>$padright

as well, such that $padright is big enough to fit the keys

See the poddoc for Bio::Graphics::Panel...

-Steve

>-----Original Message-----
>From: bioperl-l-bounces at portal.open-bio.org [mailto:bioperl-l-
>bounces at portal.open-bio.org] On Behalf Of Agrin, Nathan
>Sent: Thursday, July 15, 2004 1:13 PM
>To: bioperl-l at bioperl.org
>Subject: [Bioperl-l] Bio::Graphics Description layout question
>
>Is there anyway to get the bioperl graphics package to draw the
>descriptions for the tracks to the right of the tracks?  I've seen
>something like this done with a browser developed by JGI.  Here is the
>link to an example:
>
>http://genome.jgi-psf.org/cgi-bin/dispGeneModel?db=chlre2
><http://genome.jgi-psf.org/cgi-bin/dispGeneModel?db=chlre2&id=157911>
>&id=157911
>
>Thanks,
>Nate



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