[Bioperl-l] installation trouble

June Tantoolvesm june at ics.es.osaka-u.ac.jp
Thu Jan 29 00:38:11 EST 2004


Thank you for trying. It's too much headache for me, and you kind of
lost me somewhere with the solution, so I left alpha/OSF1 and am
befriending linux instead. Thanks anyhow, I really admire all the
experts out there.

June

> -----Original Message-----
> From: Jason Stajich
> [mailto:jason at cgt.duhs.duke.edu]
> Sent: Thursday, January 29, 2004 9:32 AM
> To: Brian Osborne
> Cc: June Tantoolvesm; bioperl-l at portal.open-
> bio.org
> Subject: RE: [Bioperl-l] installation trouble
> 
> I can replicate this problem with perl 5.6.0 and
> alpha/OSF1 and latest
> ExtUtils::MakeMaker so I would think someone need
> to re-file the bug
> report with Michael on rt.cpan.org for
> ExtUtils::MakeMaker...
> 
> make -i doesn't really work either.
> 
> This is a perl/system problem so we don't much
> control over it other than
> to start splitting bioperl into components which
> will generate a lot of
> headaches.
> 
> You can work around it by expanding some of the
> system limits for shell
> length on the machine but this is less than
> ideal...
> 
> 
> -jason
> 
> On Wed, 28 Jan 2004, Brian Osborne wrote:
> 
> > June,
> >
> > One workaround that's been used is to fix this
> 'line too long' problem is to
> > use the command 'make -i' instead of 'make'.
> This tells make to ignore
> > errors, and this was on an Alpha, like you.
> >
> > More on the problem:
> >
> > http://bioperl.org/pipermail/bioperl-l/2002-
> August/009034.html
> >
> >
> > Brian O.
> >
> > -----Original Message-----
> > From: bioperl-l-bounces at portal.open-bio.org
> > [mailto:bioperl-l-bounces at portal.open-bio.org]On
> Behalf Of June Tantoolvesm
> > Sent: Wednesday, January 28, 2004 12:58 AM
> > To: bioperl-l at portal.open-bio.org
> > Subject: [Bioperl-l] installation trouble
> >
> > Hello,
> >
> > I tried searching for help elsewhere but
> couldn't find anything...could
> > someone please help? I'm trying to install
> bioperl to a local directory.
> >
> > [june at bg03n001e00]~/bioperl-1.4(4): make
> > Make: line too long.  Stop.
> > [june at bg03n001e00]~/bioperl-1.4(7): uname -a
> > OSF1 bg03n001e00.hpc.cmc.osaka-u.ac. V5.1 1885
> alpha
> >
> > I'm not sure what other information I need to
> provide...
> >
> > Any suggestions very much appreciated.
> >
> > Thank you
> > June
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-
> bio.org/mailman/listinfo/bioperl-l
> >
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-
> bio.org/mailman/listinfo/bioperl-l
> >
> 
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu



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