[Bioperl-l] need help

[Gert Thijs]

Pierre,

You should make sure that you read the input from the file handle and
not the file name. 
when reading the file parameter as
  my $seqFile = $query->param('seqfile');

$seqFile is a handle to the file stream. So you can do things like
  while ( <$seqFile> ){
    # do something with string
  }
but you cannot use 'open' to open the file for reading, since it is
already open.

I guess you can also do something like
  my $seqio = new Bio::SeqIO( -fh => \$seq );
although I am not sure this will work.


Gert



Gert


On Thu, 2004-01-22 at 14:53, KHOUEIRY pierre wrote:
> Hi everyone;
> I wrote a script using bioperl methodes. In fact my problem isn't in 
> bioperl modules. I find problems on submitting my html form. When the 
> user browse a file, i can't open it. I used a post methode
> <Form  name="parameter" METHOD="POST" action="/cgi-bin/script.pl" 
> target="_blank">.
> <INPUT NAME="seqfile" TYPE="file" class = "text">
> ...
> 
> in my perl script i collect forms fields. but i can't open  user's file.
> Anyhelp will be appreciated
> 
> 
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-- 
+ Gert Thijs          
+ Postdoctoral Researcher
+  K.U.Leuven
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