[Bioperl-l] how to pass --noplot option to Bio::Tools::Run::Tmhmm ?

[Jason Stajich]

The object would need a little refactoring to do that.  I have made some
changes to this effect for you but need to test on a system with tmhmm
first before I check them in.

As an aside, I'm also noticing there is a real need to enforce some more
consistency in Tools::Run implementations - we have tried to put a lot of
shared functions in Bio::Tools::Run::WrapperBase which do things, but we
need volunteers to help with code audits in the future.  I'll try and hack
up a guideline sheet with input from Shawnh by the end of the month.

-jason

On Tue, 30 Sep 2003, Marc Logghe wrote:

> Hi,
> A short question: is there a way to pass the tmhmm --noplot option to the Bio::Tools::Run::Tmhmm object ?
> Greetz,
> Marc
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu