[Bioperl-l] GFF3: preliminary or implemented?

[Chris Mungall]

It seems to me that we need to extend Bio::Tools::GFF to read/write the
seqfeature nesting hierarchy using ID= and Parent= tags

This seems a little problemmatic because it requires the notion of a
unique id for features, which is lacking in bioperl

How should we progress here? Should we add add a unique_id method to
SeqFeature? Should this be autogenerated?

On 23 Oct 2003, Charles Hauser wrote:

> My last notes re:GFF3 were that it was in the 'preliminary' stage, but
> it appears as though Jason update Tools::GFF to handle '='.
>
> Question: is GFF3 a supported version now & is  GBrowse happy w/ GFF3
> formatting?
>
>
> Charles
>
>
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