[Bioperl-l] Bio::SearchIO::Writer::HSPTableWriter arguments

Remo Sanges sanges at biogem.it
Tue Mar 18 21:57:48 EST 2003


In Bio::SearchIO::Writer::HSPTableWriter module are implemented some 
arguments regarding the Hits, but if I use these I have an EXCEPTION.
Infact module search the methods in Bio::Search::HSP::GenericHSP.

here is the exception whit v 1.2.1-rc1

------------- EXCEPTION  -------------
MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't 
locate object method "expect" via package "Bio::Search::HSP::GenericHSP" 
at (eval 6) line 1, <GEN1> line 137.



STACK Bio::SearchIO::Writer::ResultTableWriter::__ANON__ 
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/Writer/ResultTableWriter.pm:329
STACK Bio::SearchIO::Writer::HSPTableWriter::to_string 
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/Writer/HSPTableWriter.pm:251
STACK Bio::SearchIO::write_result 
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO.pm:324
STACK Bio::SearchIO::blast::write_result 
/root/Desktop/bioperl/bioperl-1.2.1-rc1/Bio/SearchIO/blast.pm:887
STACK toplevel /root/Desktop/BlastTable3:50

--------------------------------------

Thanks


Remo Sanges
BioGeM - IGB
Naples



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