[Bioperl-l] Bio::DB::GFF dna doesn't work

[Philippe Vaglio]

Hi,

After getting Bioperl1.2
the following code using Bio::DB::GFF doesn't work any more


use Bio::DB::GFF;

my $db  = Bio::DB::GFF->new( -adaptor => 'dbi::mysqlopt',
                               -dsn     => 'dbi:mysql:test',
                               -fasta=>'fasta_files');


my $segment = $db->segment('chr22',17900000,18000000);

print $segment->dna;


but does work with Bio::DB::GFF from bioperl 1.0.2

Am I missing something ?


-- 
===============================================================
Philippe Vaglio			|    Tel : 617 632 2345
Dana Farber Cancer Institute    |    Fax : 617 632 5739
44 Binney Street                |
Boston, MA 02115 USA            |    http://vidal.dfci.harvard.edu
================================================================