[Bioperl-l] HMMer Results

James Wasmuth james.wasmuth at ed.ac.uk
Fri Jan 31 15:33:45 EST 2003


Hi all,

is there a method that will return the sequence of the domain hit in 
Bio::Tools::HMMER, as with ->hit_string in Bio::Search::HSP.  I can get 
the alignment for each domain, but require only the section from the 
subject sequence and not markov model.

Thanks
J



More information about the Bioperl-l mailing list