[Bioperl-l] Re: What happened to my dpAlign module?

Heikki Lehvaslaiho heikki at nildram.co.uk
Thu Dec 11 17:12:12 EST 2003


Yee Man,

Could you check 
	http://bioperl.org/DIST/current_ext_unstable.tar.gz
which now contains your additions and comments by Aaron.

I announced it a few days ago.

	-Heikki

On Thursday 11 Dec 2003 9:30 pm, Yee Man Chan wrote:
> Hi Heikki and Aaron,
>
> 	If there are no other changes since the ext-06 release, then you
> can use my file:
>
> http://www.stanford.edu/~yeeman/bioperl-ext.tar.gz
>
> as the ext-07 right off. It is ext-06 with my code and test.pl. I tested
> it to make sure it can install with no problems. To really use it you
> also need to include
>
> http://www.stanford.edu/~yeeman/dpAlign.pm
>
> in the core distribution under Bio::Tools.
>
> Regards,
> Yee Man
>
> On Tue, 2 Dec 2003, Heikki Lehvaslaiho wrote:
> > Aaron,
> >
> > I have been concentrating in getting the bioperl-core in shape and have
> > not done anything to bioperl-ext and bioperl-run. I was hoping of getting
> > them out some time after core.
> >
> > Is the ext in shape? There has not been that many changes in there, has
> > there? What is your feeling? Could we release a developer snap shot
> > together with the bioperl-core at the end of the week and epect to be
> > able to release it in a week or two maximum?
> >
> > 	-Heikki
> >
> > On Tuesday 02 Dec 2003 12:37 pm, Aaron J.Mackey wrote:
> > > Hi Yee,
> > >
> > > It is still in bioperl-live CVS, and is available in developer's
> > > releases (the 1.3.x series); it will presumably be a part of the stable
> > > 1.4.x release series, whenever that happens (Heikki knows more about
> > > this than I do).
> > >
> > > -Aaron
> > >
> > > On Dec 1, 2003, at 2:34 PM, Yee Man Chan wrote:
> > > > Hi Aaron
> > > >
> > > > 	I looked at the latest bioperl release but I couldn't find
> > > > anything about my dpAlign module. What is its status now? You can
> > > > find my
> > > > code at
> > > >
> > > > http://www.stanford.edu/~yeeman/bioperl-ext.tar.gz
> > > > http://www.stanford.edu/~yeeman/dpAlign.pm
> > > >
> > > > Thanks
> > > > Yee Man
> >
> > --
> > ______ _/      _/_____________________________________________________
> >       _/      _/                      http://www.ebi.ac.uk/mutations/
> >      _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
> >     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
> >    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
> >   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
> >      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
> > ___ _/_/_/_/_/________________________________________________________
>
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________


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