[Bioperl-l] Doesn't hurt to ask

[Siddhartha Basu]

Hi,
This is possible through the Bioperl EMBOSS wrapper Bio::Factory::EMBOSS
The EMBOSS program to run is "emma" which is the EMBOSS interface to 
clustalW.
Do a perldoc Bio::Factory::EMBOSS and
tfm emma for more detail.
Also check out this link....
http://www.bioperl.org/Core/bptutorial.html#iv.2.1_sequence_manipulation_using_the_bioperl_emboss_and_pise_interfaces

-siddhartha


Joao Magalhaes wrote:
> 
> Also, I'm trying to use ClustalW through the EMBOSS package in Bioperl. 
> Does anyone have a working script of this? Thanks.
> 
> 
> Joao Pedro de Magalhaes
> 
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