[Bioperl-l] SearchIO question

nkuipers nkuipers@uvic.ca
Wed, 27 Nov 2002 20:14:13 -0800


Hi folks,

I want to parse "from hit position x, to hit position y" information for high 
scoring pairs in a blast report.  Bio::Tools::BPlite has $hsp->hit->start/end, 
and Bio::Blast has similar idea.  I'd like to stay away from both, especially 
the latter since its documentation is big and scary.  ;)  I wasn't able to 
find similar functionality in the documentation for Bio::SearchIO, ResultI, 
HitI or HSPI...did I miss something or is this sort of information in some 
kind of Seq object or..??

Thanks,

Nathanael Kuipers