[Bioperl-l] Bio::Tools::Run::StandAloneBlast on a cluster?

Elia Stupka elia@fugu-sg.org
Fri, 22 Nov 2002 14:00:16 +0800 (SGT)


> Hi All, I was wondering if anyone has done anything towards a script that
> utilises Bio::Tools::Run::StandAloneBlast on a cluster (or made mods to
> StandAloneBlast.pm that would make such a thing transparent)?

We currently run blast on a cluster via bioperl modules using our software
BioPipe, which is a simple workflow management software. We use it
routinely to perform series of blast runs, as well as full genome
annotation. You can read more and download,etc. at www.biopipe.org/

Elia

********************************
* http://www.fugu-sg.org/~elia *
* tel:    +65 6874 1467        *
* mobile: +65 9030 7613        *
* fax:    +65 6779 1117        *
********************************