[Bioperl-l] "too many open files "

[Jason Stajich]

File::Temp isn't cleaning up on object destruction b/c we hadn't closed
the filehandles in the module - you can get the code changes from the cvs
version or they should be in bioperl-run-1.1.0 release version.


Note that (as stated in the README) we have moved the Bio/Tools/Run to a
separate package so that people don't feel that have to install the
runnable wrappers as part of the core components of bioperl.

% cvs log Bio/Tools/Run/StandAloneBlast.pm
[snip out the tag listing]
----------------------------
revision 1.22
date: 2002/07/06 23:53:36;  author: jason;  state: Exp;  lines: +7 -1
explicitly closing some filehandles appears to do a better job freeing
resources
----------------------------

-jason
On Sat, 9 Nov 2002, Xiaopeng(Peter) Yang wrote:

> http://www.bioperl.org/pipermail/bioperl-l/2002-November/010091.html
>
> Dear Bioperl folks,
>
> I have the same problem as the link. I tried to create
> a new factory and destroy() and undef those report anond
> other bioperl objects inside each iteration, but I
> have the same error message. Can anyone please tell me
> what to do please?
>
> Thanks.
>
> Peter
>
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu