[Bioperl-l] bioperl bug (fwd)

[Elia Stupka]

It looks like this bug been fixed on the main trunk without fixing on the
branch? Let us know if there was a good reason or if we should just go
ahead and commit it...

Elia

---------- Forwarded message ----------
Date: Thu, 24 Jan 2002 22:54:17 +0800 (SGT)
From: shawnh@worf.fugu-sg.org
To: fugui@fugu-sg.org
Subject: bioperl bug

Hi Jerm and Elia,
the bioperl bug that we found

 if (not defined $p) {($p) = $scoreline =~ /Expect =\s+(\S+)/}
does not work for Expect(2) = 1e-10


was fixed in version 1.18 using
if (not defined $p) {(undef, $p) = $scoreline =~ /Expect(\(\d+\))? =\s+(\S+)/}

I understand you are running blast now?
shawn


-- 
********************************
* Shawn Hoon
* http://www.fugu-sg.org/~shawnh
********************************