[Bioperl-l] all tests pass on head

[Nicolas Joly]

On Fri, Jan 11, 2002 at 07:06:35PM +0100, Nicolas Joly wrote:
> On Fri, Jan 11, 2002 at 05:18:42PM +0000, Heikki Lehvaslaiho wrote:
> > 
> > Last fixes were to psiblast.pm
> > 
> > Steve, 
> > 
> > Could you check that _process_significance is logically correct!
> > Is minumum value to significance and score is 0?
> > 
> > Ewan's problems with t_coffee tests were caused by a really old program
> > version, so even that is in order.
> > 
> > Let's roll out 0.93!
> 
> Just a small thing that may be added to known problems ...
> 
> Under Tru64 unix v5.x (up to 5.1pk3), we found problems in using
> `DB_File' perl module on NFSv3 filesystems (client side). New db files
> are incorrectly created and later access make perl scripts crash !

Ooops, i forgot to say that tests using `DB_File' are failing in that
case :

[...]
t/Blast.............ok                                                       
t/BlastIndex........dubious                                                  
        Test returned status 0 (wstat 139, 0x8b)
        test program seems to have generated a core
DIED. FAILED tests 3-13
        Failed 11/13 tests, 15.38% okay
t/Chain.............ok                                                       
[...]
t/HTML..............ok                                                       
t/Index.............------------- EXCEPTION  -------------
MSG: Can't open 'DB_File' dbm file 'Wibbl' : Error number 79 occurred
STACK Bio::Index::Abstract::open_dbm
blib/lib/Bio/Index/Abstract.pm:390
STACK Bio::Index::Abstract::new blib/lib/Bio/Index/Abstract.pm:151
STACK Bio::Index::AbstractSeq::new
blib/lib/Bio/Index/AbstractSeq.pm:91
STACK toplevel t/Index.t:26

--------------------------------------
t/Index.............dubious                                                  
        Test returned status 79 (wstat 20224, 0x4f00)
DIED. FAILED tests 1-10
        Failed 10/10 tests, 0.00% okay
t/LiveSeq...........ok                                                       
[...]

-- 
Nicolas Joly

Biological Software and Databanks.
Pasteur Institute, Paris.