[Bioperl-l] Bio::Perl updates; Hmmer tests failing; Exception failing

[Steve Chervitz]

The Exception and RestrictionEnzyme tests are now happy once again.

Steve

--- Ewan Birney <birney@ebi.ac.uk> wrote:
> 
> 
> 
> I have added the functions
> 
> translate 
> 
> and
> 
> translate_as_string 
> 
> to the "functional" Bio::Perl module (ideal for newbies)
> 
> 
> 
> allowing people to do the following script:
> 
> 
> 
> 
> use Bio::Perl;
> 
> 
> $aa = translate_as_string("ATGTTT");
> 
> if( $aa ne 'MF' ) {
>    print "Bad shit man, not the universal code\n";
> } else {
>    print "Rock on Met and Phe\n";
> }
> 
> 
> I am going to look more into Bio::Perl to be as useful and magically as
> possible for new users.
> 
> 
> 
> 
> Other points:
> 
> 
>   (a) Hmmer tests are failing - anyone want to 'fess up to poking around
> there? If not, I'll roll up my sleeves
> 
>   (b) ditto Exception
> 
>   (c) ditto RestrictionEnzyme
> 
> 
> 
> e.
> 
> 
> 
> 
> 
> 
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>. 
> -----------------------------------------------------------------
> 
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=====
Steve Chervitz
sac@bioperl.org

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