[Bioperl-l] (no subject)

[Hilmar Lapp]

On Wed, 27 Mar 2002 Laurent.Naudin@aventis.com wrote:

> Dear all,
> 
> I use the BioPerl module for parsing sim4 results. I am not very aware with
> Perl programming 
> and I would like to know if it is possible to get the aligned sequence
> segments by any method from a 
> Sim4::Results object or Sim4::Exon object.
> In other words, something like the seq_str() method one can use for
> extracting query and subject aligned segments from blast hsps.
> 
> Thanks a lot for helping.
> 
> 
> Laurent NAUDIN

You cannot, as it is not stored in any of the objects right now. In
fact, the sim4 parser isn't even integrated into the AlignIO
framework.

	-hilmar
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Hilmar Lapp                              email: hilmarl@yahoo.com
San Diego, CA                            phone: +1 858 812 1757
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