[Bioperl-l] bioperl-db branch

Jason Eric Stajich jason@cgt.mc.duke.edu
Wed, 28 Nov 2001 22:11:39 -0500 (EST)


added a branch
bioperl-db-branch-0-01

Will check in my changes tomorrow which support new bioperl-live stuff
including fix for new annotation structure and Root vs RootI onto HEAD.

Started to see how hard it would be to make system work with postgresql
and found that a couple of key things are pretty incompatible esp with the
DBTestHarness.  James G to the rescue?  You wouldn't think now would you
with DBI/DBD...

-jason
On Thu, 29 Nov 2001, Elia Stupka wrote:

> > fix some of the bioperl-db code to work with the current live bioperl
> > code, is there any reason to branch so that bug fixes can be made for
> > bioperl-db code that works with bioperl 0.7.2 ?
>
> I know that we will not move to bioperl-live immediately, and actively
> used bioperl-db, and I know there is a couple of places out there that do
> the same, it could be useful.
>
> Elia
>
>

-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu