[Bioperl-l] SeqIO::Genbank.pm patches

[Hilmar Lapp]

Malcolm Cook wrote:
> 
> I've made the following changes to my local copy of the release branch of
> genbank.pm
> 
> 1) include an 'others' section in the BASE COUNT line;  (code line 493)
>     my $base_count = sprintf("BASE COUNT %8s a %6s c %6s g %6s t %6s
> others\n",$alen,$clen,$glen,$tlen,$olen);
> 
> 2) space pad the ORIGIN keyword (code line 495).  Doing this made the format
> acceptable to BioTools' GeneTool program
>     $self->_print("ORIGIN      \n");
> 
> Please excuse the informality of my means of submission of these simple
> suggested patches to SeqIO::genbank.pm:
> 
> I hope to soon join the cvs fray; my corporate firewall combined with my
> inexperience has made this temporarily difficult.
> 
> Cheers,
> 
> Malcolm
> 

Fixed both on branch and main trunk.

	Hilmar
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Hilmar Lapp                              email: hilmarl@yahoo.com
GNF, San Diego, Ca. 92122                phone: +1 858 812 1757
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