[Bioperl-l] BPslite and iterations

[Wiepert, Mathieu]

Biojava has a SAXLike parser for Blast, WU Blast, HUMMER and GCG (not all
versions ant types of all programs thought).  Insert that driver in to an
XSLT processor , and any XSL that anyone wants could be generated.  So if
the BioCorba thing works out, wouldn't that be a good longer term solution?


 -----Original Message-----
From: 	Jason Stajich [mailto:jason@chg.mc.duke.edu] 
Sent:	Friday, March 30, 2001 11:02 AM
To:	Bioperl; Peter Schattner
Cc:	a.mueller@icrf.icnet.uk
Subject:	Re: [Bioperl-l] BPslite and iterations

On Fri, 30 Mar 2001, Peter Schattner wrote:

> Arne Mueller wrote:
>
> > Also, are there any future plans to parse xml output from blast/psiblast
> > ?
>
> Not that I am aware of.
>
No specific future plans, but it is something we want bioperl to be able
to do, just haven't had anyone volunteer to do it yet.

>
> Regards
>
> Peter
>
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>

Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center
http://www.chg.duke.edu/


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