[Bioperl-l] 0.7.1 X-platform results for OpenBSD 2.8 i386 (AlignIO failing)

[chris dagdigian]

output of 'make test'
=================================
Failed Test  Status Wstat Total Fail  Failed  List of failed
-------------------------------------------------------------------------------
t/AlignIO.t                  18   10  55.56%  2, 4, 6, 8, 10, 12-13, 
15-16, 18
24 subtests skipped.
Failed 1/60 test scripts, 98.33% okay. 10/991 subtests failed, 98.99% okay.
*** Error code 255

Stop in /home/dag/bioperl/branch-07 (line 1152 of Makefile).



output of 'perl t/AlignIO.t'

============================

cvs:branch-07 {139} perl t/AlignIO.t
1..18
ok 1
not ok 2
# Test 2 got: <UNDEF> (t/AlignIO.t at line 21)
#   Expected: '1433_LYCES-9-246'
ok 3
not ok 4
# Test 4 got: <UNDEF> (t/AlignIO.t at line 27)
#   Expected: '1433_LYCES-9-246' ( failed pfam input test)
ok 5
not ok 6
# Test 6 got: <UNDEF> (t/AlignIO.t at line 36)
#   Expected: '1433_LYCES-9-246' ( failed msf input test)
ok 7
not ok 8
# Test 8 got: <UNDEF> (t/AlignIO.t at line 47)
#   Expected: 'AK1H_ECOLI-114-431' ( failed fasta input test )
ok 9
not ok 10
# Test 10 got: <UNDEF> (t/AlignIO.t at line 57)
#    Expected: 'AK1H_ECOLI-114-431' ( failed selex format test )
ok 11
not ok 12
# Test 12 got: <UNDEF> (t/AlignIO.t at line 65)
#    Expected: 'AK1H_ECOLI-1-318' ( failed mase input test )
not ok 13
# Test 13 got: <UNDEF> (t/AlignIO.t at line 69)
#    Expected: 'P04777-1-33' ( failed prodom input test )
ok 14
not ok 15
# Test 15 got: <UNDEF> (t/AlignIO.t at line 79)
#    Expected: 'P04777-1-33' (  failed clustalw (.aln) output test - was )
not ok 16
# Test 16 got: <UNDEF> (t/AlignIO.t at line 85)
#    Expected: 'AK1H_ECOLI-114-431' (  failed filehandle input test  )
ok 17
not ok 18
# Test 18 got: <UNDEF> (t/AlignIO.t at line 94)
#    Expected: 'ALEU_HORVU -60-360' (failed BLAST bl2seq format test)