[Bioperl-l] Re: LiveSeq tests warn

Paul-Christophe Varoutas paul-christophe.varoutas@curie.fr
Wed, 31 Jan 2001 16:19:06 +0100


I guess you are talking about the small bug I fixed yesterday in 
/Bio/LiveSeq/SeqI.pm and Bio/LiveSeq/Gene.pm:

http://bioperl.org/pipermail/bioperl-guts-l/2001-January/002957.html

(I committed after Hilmar's mail and before Joseph's answer).

Paul-Christophe




At 00:08 31/01/2001 +0000, Joseph Insana wrote:
> > Just to let you know, I'm getting warnings on my machine from
> > LiveSeq.t and Mutator.t. Could you check whether this might
> > indicate an error? (I'm running Perl 5.005_03 on Linux 2.2.10.)
>
>Strange, I have nothing like that.
>Hmmmm. It seems it's complaining because I used "ne" instead than "!="
>to test for something to be -1 or not -1.
>My perl is not complaining.
>I am running perl v5.6.0 on linux 2.4.0.
>
>Try please putting "!=" instead than "ne" and see if it gets fixed.
>
>Joseph
At 11:41 30/01/2001 -0800, Hilmar Lapp wrote:
>Just to let you know, I'm getting warnings on my machine from
>LiveSeq.t and Mutator.t. Could you check whether this might
>indicate an error? (I'm running Perl 5.005_03 on Linux 2.2.10.)
>
>         Hilmar
>
>t/LiveSeq...........Argument "LiveSeq" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/SeqI.pm line 1202.
>Argument "ARRAY" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/SeqI.pm line 1207.
>Argument "HASH" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/SeqI.pm line 1215.
>Argument "LiveSeq" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/Gene.pm line 380.
>Argument "ARRAY" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/Gene.pm line 385.
>Argument "HASH" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/Gene.pm line 393.
>ok
>
>t/Mutator...........Argument "LiveSeq" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/SeqI.pm line 1202.
>Argument "ARRAY" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/SeqI.pm line 1207.
>Argument "HASH" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/SeqI.pm line 1215.
>Argument "LiveSeq" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/Gene.pm line 380.
>Argument "ARRAY" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/Gene.pm line 385.
>Argument "HASH" isn't numeric in ne at
>blib/lib/Bio/LiveSeq/Gene.pm line 393.
>ok
>
>
>--
>-----------------------------------------------------------------
>Hilmar Lapp                                email: hlapp@gmx.net
>GNF, San Diego, Ca. 92122                  phone: +1 858 812 1757
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