[Bioperl-l] Bio::Tools::HMMER

Ewan Birney birney@ebi.ac.uk
Mon, 5 Feb 2001 10:53:46 +0000 (GMT)


On Sun, 4 Feb 2001, Hilmar Lapp wrote:

> I've added some deprecation warnings where the documentation says
> that the methods *are* deprecated. This is now triggering lots of
> warnings in the HMMER test. Anyone willing to fix it?

I'll look at this and the interface compliance. No promises...

> 
> <Warning: the following is purely technical and may mean nothing
> to those who don't know the module's code> In addition, I've
> changed the way the 2 features are initialized in Domain.pm. The
> potential problem here is that if you set freshly initialized
> SeqFeature objects after initializing $self you may lose all
> -start etc initialization parameters. BTW is creating the two
> feature objects still necessary, as FeaturePair creates them
> itself if requested and not yet set.</warning>
> 
> 	Hilmar
> -- 
> -----------------------------------------------------------------
> Hilmar Lapp                                email: hlapp@gmx.net
> GNF, San Diego, Ca. 92122                  phone: +1 858 812 1757
> -----------------------------------------------------------------
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