[Bioperl-l] other parts of feature complete

Ewan Birney birney@ebi.ac.uk
Tue, 11 Dec 2001 09:03:15 +0000 (GMT)


On Mon, 10 Dec 2001, Jason Stajich wrote:

> Maybe biting off more than I can chew but...
> 
> Can we possible provide an interface to the Literature Reference servers -
> is the Annotation::Collection interface robust enough to handle these now?
> 
> NCBI Pubmed through Entrez and Medline through EBI dbfetch.  I'm happy to
> implement some of this if we can nail down the methods in an interface.
> 
> I would imagine an interface Bio::Factory::AnnotationFactoryI, and an
> implemention in Bio::DB::Annotation::XX?  Eventually complicated stuff like
> interfacing to Martin's BQS could be mediated through something here as
> well?

If you or someone else codes it... sure!


But let's be honest. This is isn't... absolutely-completely-trivial....



> 
> -jason
> 
> -- 
> Jason Stajich
> Duke University
> jason@cgt.mc.duke.edu
> 
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