[Bioperl-l] accessing optional qualifiers within features?

Ewan Birney birney@ebi.ac.uk
Sun, 12 Nov 2000 10:52:04 +0000 (GMT)


On Sat, 11 Nov 2000, Samuel Aparicio wrote:

> Hi everyone
> I am wondering if there is a method in Bioperl which allows access to
> optional qualifiers with features in a genbank/embl entry. For example,
> being able to parse out
> the value of /note in the example below.
> 
>  repeat_region   1586..1760
>                      /note="L1M1 repeat: matches 5299..5484 of
> consensus"

;) I know what generates those comments...

go for @values =  $seqfeature->each_tag_value('note');


> 
> regards
> 
> Sam Aparicio
> 
> -----
> Samuel Aparicio | Wellcome Institute for Molecular Mechanisms in Disease
> 
> Addenbrookes, Cambridge CB2 2XY. +44 1223 762663 (tel)
> saparici@hgmp.mrc.ac.uk
> 
> 
> 
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