[Bioperl-l] Re: SeqIO bug report

[Kris Boulez]

Quoting Hilmar Lapp (hlapp@gmx.net):
> Kris Boulez wrote:
> > 
> > -------------------- EXCEPTION --------------------
> > MSG:
> > CONTEXT: Error in uNKNOWN CONTEXT
> > SCRIPT: seqtest_pir.pl
> > STACK:
> > Bio::Root::RootI::new(87)
> > Bio::SeqIO::pir::next_seq(111)
> > main::seqtest_pir.pl(18)
> > ---------------------------------------------------
> > 
> 
> That's weird. Line 87 in RootI is the begin of the BEGIN block. If
> there's something wrong with it, why doesn't it simply always pop up?
> 
> Which perl version are you using on your Linux box? I guess 5.005.
> 

This is perl, version 5.005_03 built for i386-linux

Could this be because the PIR file contains DNA sequence (shouldn't be
as GATC are legal amino acid).

Kris,