[Bioperl-l] Genbank to XML conversion tool

[Philippe Bouige]

> Subject: [BioXML-dev] RE: [Bioperl-l] xml sequence download from ncbi

> > > Sequence download using an xml format derived from our 
> > asn.1 standard format
> > > is now available from Entrez.  For an example, try
> > > 
> > http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?cmd&save=on&view
> > =xml&val=18279
> > > 15  where val is the sequence gi number.  Note that this 
> > xml output is based


	You have also the software "gb2xml" that transform the
sequence genbank in XML.

	See :

	Biological software developed at Pasteur Institute
	http://bioweb.pasteur.fr/seqanal/soft-pasteur.html
	http://bioweb.pasteur.fr/seqanal/formats-uk.html

	and 

	ABI  GB2xml (Genbank to XML conversion tool)
	http://www.up.univ-mrs.fr/~wabim/english/logligne.html

		

			A++		Philippe Bouige