Bioperl: Start of alignment debate...

Rubin Eitan
Mon, 25 Jan 1999 10:34:37 +0200 (IST)

Just a quick thought - you should consider the blocks type of MSA, i.e. 
were some regions are aligned (w/o gaps) and others are simply 
disregarded. An alignemnt using blocks would actually be a collection of 
alignments, but may still be used as a single alignment for purposes such 
as tree construction.


Eitan Rubin,
Plant Genetics, Weizmann Inst of Science, Rehovot, Israel.  
Tel: (00972)-(8)9342421 Fax: (00972)-(8)9344181
EitanR@BioMOO ( - visit 
                                            the GCG help desk

in vivo -> in vitro -> in silico

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