<div dir="ltr"><div>Hi all.</div><div><br></div><div>I am completely inexperienced with respect to using Maven and I am encountering immense difficulty in building the latest version that I have cloned from GitHub.</div><div><br></div><div>After entering the BioJava folder, edited my pom.xml file to include the following dependencies:</div><div><br></div><div> <dependencyManagement><br><dependencies><br> <dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-core</artifactId><br> <version>5.1.0-SNAPSHOT
</version><br> </dependency><br> <br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-aa-prop</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-alignment</artifactId><br> <version>
5.1.0-SNAPSHOT </version><br> </dependency><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-genome</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-integrationtest</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-modfinder</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-ontology</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-protein-disorder</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-structure-gui</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-structure</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency><br><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-survival</artifactId><br> <version>5.1.0-SNAPSHOT</version><br> </dependency><br><br><dependency><br> <groupId>org.biojava</groupId><br> <artifactId>biojava-ws</artifactId><br> <version>
5.1.0-SNAPSHOT
</version><br> </dependency></div><div><br></div><div>I then issued the command "mvn clean" which displayed the message "Build Success". I then issued "mvn install" which failed with:</div><div><br></div><div>[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.377 s - in org.biojava.nbio.core.TestAmbiguityCompoundSet<br>[INFO] Running org.biojava.nbio.core.util.TestUncompressInputStream<br>[ERROR] Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.35 s <<< FAILURE! - in org.biojava.nbio.core.util.TestUncompressInputStream<br>[ERROR] testUncompression(org.biojava.nbio.core.util.TestUncompressInputStream) Time elapsed: 0.31 s <<< FAILURE!<br>java.lang.AssertionError: array lengths differed, expected.length=9068 actual.length=9257<br> at org.biojava.nbio.core.util.TestUncompressInputStream.testUncompression(TestUncompressInputStream.java:70)<br><br>[INFO]<br>[INFO] Results:<br>[INFO]<br>[ERROR] Failures:<br>[ERROR] TestUncompressInputStream.testUncompression:70 array lengths differed, expected.length=9068 actual.length=9257<br>[INFO]<br>[ERROR] Tests run: 244, Failures: 1, Errors: 0, Skipped: 6<br>[INFO]<br>[INFO] ------------------------------------------------------------------------<br>[INFO] Reactor Summary:<br>[INFO]<br>[INFO] biojava-core 5.1.0-SNAPSHOT ........................ FAILURE [01:35 min]<br>[INFO] biojava-alignment 5.1.0-SNAPSHOT ................... SKIPPED<br>[INFO] biojava-structure 5.1.0-SNAPSHOT ................... SKIPPED<br>[INFO] biojava-structure-gui 5.1.0-SNAPSHOT ............... SKIPPED<br>[INFO] biojava-genome 5.1.0-SNAPSHOT ...................... SKIPPED<br>[INFO] biojava-modfinder 5.1.0-SNAPSHOT ................... SKIPPED<br>[INFO] biojava-ws 5.1.0-SNAPSHOT .......................... SKIPPED<br>[INFO] biojava-protein-disorder 5.1.0-SNAPSHOT ............ SKIPPED<br>[INFO] biojava-aa-prop 5.1.0-SNAPSHOT ..................... SKIPPED<br>[INFO] biojava-survival 5.1.0-SNAPSHOT .................... SKIPPED<br>[INFO] biojava-ontology 5.1.0-SNAPSHOT .................... SKIPPED<br>[INFO] biojava-integrationtest 5.1.0-SNAPSHOT ............. SKIPPED<br>[INFO] biojava 4.2.2 ...................................... SKIPPED<br>[INFO] ------------------------------------------------------------------------<br>[INFO] BUILD FAILURE<br>[INFO] ------------------------------------------------------------------------<br>[INFO] Total time: 01:36 min<br>[INFO] Finished at: 2018-05-23T12:26:00-07:00<br>[INFO] ------------------------------------------------------------------------<br>[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.21.0:test (default-test) on project biojava-core: There are test failures.<br>[ERROR]<br>[ERROR] Please refer to C:\Users\CaitlinG\biojava\biojava-core\target\surefire-reports for the individual test results.<br>[ERROR] Please refer to dump files (if any exist) [date]-jvmRun[N].dump, [date].dumpstream and [date]-jvmRun[N].dumpstream.<br>[ERROR] -> [Help 1]<br>[ERROR]<br>[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.<br>[ERROR] Re-run Maven using the -X switch to enable full debug logging.<br>[ERROR]<br>[ERROR] For more information about the errors and possible solutions, please read the following articles:<br>[ERROR] [Help 1] <a href="http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException">http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException</a><br><br>C:\Users\CaitlinG\biojava></div><div><br></div><div>Thank you for any help you can offer.</div><div><br></div><div>~Caitlin</div><div><br></div><div><br></div><div><br></div></div>