<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">Hi Jose,<div><br></div><div>I was using slf4j + logback.xml. Apparently I had a conflict with logback.xml and log4j2.xml from biojava!</div><div><br></div><div>Replacing logback.xml by log4j2.xml fixed the problem.</div><div><br></div><div>Thanks for your reply.</div><div><br></div><div>Khalil</div><div><div>
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<br><div><div>On 30 Aug 2015, at 14:00, <a href="mailto:biojava-l-request@mailman.open-bio.org">biojava-l-request@mailman.open-bio.org</a> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Send Biojava-l mailing list submissions to<br><span class="Apple-tab-span" style="white-space:pre"> </span><a href="mailto:biojava-l@mailman.open-bio.org">biojava-l@mailman.open-bio.org</a><br><br>To subscribe or unsubscribe via the World Wide Web, visit<br><span class="Apple-tab-span" style="white-space:pre"> </span>http://mailman.open-bio.org/mailman/listinfo/biojava-l<br>or, via email, send a message with subject or body 'help' to<br><span class="Apple-tab-span" style="white-space:pre"> </span>biojava-l-request@mailman.open-bio.org<br><br>You can reach the person managing the list at<br><span class="Apple-tab-span" style="white-space:pre"> </span>biojava-l-owner@mailman.open-bio.org<br><br>When replying, please edit your Subject line so it is more specific<br>than "Re: Contents of Biojava-l digest..."<br><br><br>Today's Topics:<br><br> 1. Re: logging level (Jose Manuel Duarte)<br><br><br>----------------------------------------------------------------------<br><br>Message: 1<br>Date: Sun, 30 Aug 2015 13:57:44 +0200<br>From: Jose Manuel Duarte <jose.duarte@psi.ch><br>To: <biojava-l@mailman.open-bio.org><br>Subject: Re: [Biojava-l] logging level<br>Message-ID: <55E2EFB8.3010402@psi.ch><br>Content-Type: text/plain; charset="windows-1252"; Format="flowed"<br><br>Hi Khalil<br><br>How exactly are you developing/deploying your application? Do you use <br>maven? Have you included any log4j2 configuration file at all?<br><br>You can surely always add a log4j2.xml config file to your project, in <br>there you can modify any logging configuration either for biojava or any <br>other part of your code that uses log4j2.<br><br>[biojava uses slf4j (a meta-logging framework which can use many <br>underlying implementations) and then log4j2 as the default implementation ]<br><br>Jose<br><br><br>On 28.08.2015 17:33, Khalil EL MAZOUARI wrote:<br><blockquote type="cite">Hi,<br><br>when I add biojava-alignment-4.1.0 and biojava-phylo-4.1.0 to my app, <br>my logging level changes and is set by default to WARN.<br><br>Any idea how ?override? the logging level from biojava-4?<br><br>Thanks<br><br><br><br>---<br>Confidentiality Notice: This e-mail and any files transmitted with it <br>are private and confidential and are solely for the use of the <br>addressee. It may contain material which is legally privileged. If you <br>are not the addressee or the person responsible for delivering to the <br>addressee, please notify that you have received this e-mail in error <br>and that any use of it is strictly prohibited. It would be helpful if <br>you could notify the author by replying to it.<br><br><br><br>_______________________________________________<br>Biojava-l mailing list - Biojava-l@mailman.open-bio.org<br>http://mailman.open-bio.org/mailman/listinfo/biojava-l<br></blockquote><br>-------------- next part --------------<br>An HTML attachment was scrubbed...<br>URL: <http://mailman.open-bio.org/pipermail/biojava-l/attachments/20150830/16b9d315/attachment-0001.html><br><br>------------------------------<br><br>_______________________________________________<br>Biojava-l mailing list - Biojava-l@mailman.open-bio.org<br>http://mailman.open-bio.org/mailman/listinfo/biojava-l<br><br>End of Biojava-l Digest, Vol 150, Issue 8<br>*****************************************<br></blockquote></div><br></div></body></html>