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How to get and parse data from the PDB:<br>
<br>
<a class="moz-txt-link-freetext" href="https://github.com/biojava/biojava-tutorial/blob/master/structure/firststeps.md">https://github.com/biojava/biojava-tutorial/blob/master/structure/firststeps.md</a><br>
<br>
How to get the data once parsed the file into a Structure object:<br>
<br>
<a class="moz-txt-link-freetext" href="https://github.com/biojava/biojava-tutorial/blob/master/structure/structure-data-model.md">https://github.com/biojava/biojava-tutorial/blob/master/structure/structure-data-model.md</a><br>
<br>
Jose<br>
<br>
<br>
<div class="moz-cite-prefix">On 14.08.2015 22:30, ADITYA MANTHA
wrote:<br>
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<blockquote
cite="mid:CAM_xwEaiOnB4-MxS68tAW_70Dvnor166U7Q664sXNseT1DzdyA@mail.gmail.com"
type="cite">
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<div dir="ltr">well , i tried to. But i could not find a proper
solution . Can you tell the specific example with some sample
codes . As i am new to BioInformatics .</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Sat, Aug 15, 2015 at 1:48 AM, Jose
Manuel Duarte <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:jose.duarte@psi.ch" target="_blank">jose.duarte@psi.ch</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000"> Did you check the
biojava tutorial? It explains how to do the file parsing
and how to retrieve the data:<br>
<br>
<a moz-do-not-send="true"
href="https://github.com/biojava/biojava-tutorial"
target="_blank">https://github.com/biojava/biojava-tutorial</a><br>
<br>
Jose
<div>
<div class="h5"><br>
<br>
<br>
<br>
<div>On 14.08.2015 20:13, ADITYA MANTHA wrote:<br>
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<div class="h5">
<div dir="ltr">Currently, I am trying to implement
Chou Fasman Algorithm in Java . For this i need to
retrieve information regarding Name , Primary
Sequence and Secondary Structure information .
Can someone help me out how to parse this data
from a PDB file .<br clear="all">
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-- <br>
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<div dir="ltr">
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<div dir="ltr">
<div>Best Regards</div>
<div><br>
</div>
ADITYA MANTHA
<div>Sophomore</div>
<div>Instrumentation Engineering</div>
<div>Department of Electrical Engineering</div>
<div>IIT KHARAGPUR</div>
<div>9800192364</div>
</div>
</div>
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<br clear="all">
<div><br>
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-- <br>
<div class="gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>Best Regards</div>
<div><br>
</div>
ADITYA MANTHA
<div>Sophomore</div>
<div>Instrumentation Engineering</div>
<div>Department of Electrical Engineering</div>
<div>IIT KHARAGPUR</div>
<div>9800192364</div>
</div>
</div>
</div>
</div>
</div>
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