<div dir="ltr">- Not everything from the cookbook is part of the tutorial, yet. If you want to make a contribution, that would be more than welcome!<div>- Combining cookbook and tutorial would be great, however the tutorial often adds a bit more text, to provide more explanations.</div><div>- We are definitely open to pull requests.<br><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Jul 15, 2015 at 11:23 PM, Jan Stourac <span dir="ltr"><<a href="mailto:xstourac@gmail.com" target="_blank">xstourac@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<div>Dear Andreas,<br>
<br>
thank you for your response and proposed workaround. If I will
need it more often, I will consider creating the yahoo account and
use that.<br>
<br>
- Broken links:<br>
Links to API documentation here:
<a href="http://biojava.org/wiki/BioJava:CookBook:PDB:seqres" target="_blank">http://biojava.org/wiki/BioJava:CookBook:PDB:seqres</a><br>
In source code example, there are already "nbio" packages used,
but links in text are still pointing to "bio" (and thus are not
accessible).<br>
<br>
Thank you for sending me link to the tutorial. Is everything from
wiki (CookBook) moved somewhere to this tutorial? Or should I
still combine both?<br>
And is this tutorial also opened for "pull requests"?<span class="HOEnZb"><font color="#888888"><br>
<br>
Jan</font></span><div><div class="h5"><br>
<br>
On 07/16/2015 08:02 AM, Andreas Prlic wrote:<br>
</div></div></div><div><div class="h5">
<blockquote type="cite">
<div dir="ltr">Thanks Jan,
<div><br>
</div>
<div>We are currently waiting for some upgrades of the software
running on the server that is hosting <a href="http://biojava.org" target="_blank">biojava.org</a>.
In the meanwhile, the only way to log in using open-id is by
creating a yahoo account. </div>
<div><br>
</div>
<div>This is slightly annoying, however it is possible to
associate this with already existing accounts. As such it
should offer an acceptable work-around.</div>
<div><br>
</div>
<div>- What links are broken? </div>
<div><br>
</div>
<div>In the meanwhile there is also a growing tutorial on
github, which might be worth taking a look: <a href="https://github.com/biojava/biojava-tutorial" target="_blank"></a><a href="https://github.com/biojava/biojava-tutorial" target="_blank">https://github.com/biojava/biojava-tutorial</a> </div>
<div><br>
</div>
<div>Andreas</div>
<div>
<div><br>
</div>
<div><br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Jul 15, 2015 at 10:52 PM, Jan
Stourac <span dir="ltr"><<a href="mailto:xstourac@gmail.com" target="_blank">xstourac@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF"> Dear BioJava team,<br>
<br>
today I wanted to fix some broken links on your wiki,
but my attempt to login using my Google Account ends up
in this error message:<br>
<br>
================================<br>
<h1>OpenID 2.0 for Google Accounts has gone away</h1>
<p>If you've been redirected to this page, it means that
you're using a website that doesn't support the latest
sign-in standards from Google. We no longer provide
this legacy sign-in service for Google accounts, and
recommend using an alternative method to sign in on
that website. If you previously used your Google
account to sign in, you may be able to recover your
account using a “forgot password” feature, or by
contacting that websites’ support team.</p>
<p>Some websites use OpenID 2.0 for authentication when
you're signing in, and to access data that you've
given them permission to access. OpenID 2.0 was
replaced by OpenID Connect, and since April 20, 2015,
no longer works for Google Accounts. OpenID 2.0
support was shut down in order to focus on the newer
open standard OpenID Connect, which provides greater
security for your account.<br>
</p>
<p>================================<br>
</p>
<p>Are you please planning to add support for this
"latest sign-in standards" or should I create OpenID
itself?<br>
</p>
<p>Thank you in advance,<br>
Jan Stourac.<br>
</p>
</div>
<br>
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