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Hi Guoying<br>
<br>
Thanks for reporting the problem. I've added the issue to github and
fixed it:<br>
<br>
<a class="moz-txt-link-freetext" href="https://github.com/biojava/biojava/issues/289">https://github.com/biojava/biojava/issues/289</a><br>
<br>
The next release of biojava should then contain the fix. <br>
<br>
Note that you can also directly open issues in github to report
specific problems like this one.<br>
<br>
Cheers<br>
<br>
Jose<br>
<br>
<br>
<div class="moz-cite-prefix">On 25.06.2015 15:38, Guoying Qi wrote:<br>
</div>
<blockquote
cite="mid:0B91117E-F086-40CC-8F5A-8D81244B6506@ebi.ac.uk"
type="cite">
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<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">For PDB 4xcw, only partial organism scientific name
returned by the following method:</div>
<div class=""><br class="">
</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">getOrganismScientific()</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">org.biojava.nbio.structure.Compound </div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class=""><br class="">
</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">HELICOBACTER PYLORI (STRAIN J99 / ATCC 7</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class=""><br class="">
</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">I traced back to PDBFileParser, it seems this PDB file
being treated in legacy format and the line length being trimmed
into 72.</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class=""><br class="">
</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">Can this problem be fixed somehow?</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class=""><br class="">
</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">Thanks.</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class=""><br class="">
</div>
<div style="margin: 0px; font-size: 11px; font-family: Monaco;"
class="">Guoying Qi</div>
<br>
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<br>
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</blockquote>
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