<div dir="ltr">Hi Henk,<div><br></div><div>Do you want to share some code-snippets so we can help you debug?</div><div><br></div><div>Thanks,</div><div><br></div><div>Andreas</div><div><br></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jun 15, 2015 at 1:58 AM, Toorn, H.W.P. van den (Henk) <span dir="ltr"><<a href="mailto:h.w.p.vandentoorn@uu.nl" target="_blank">h.w.p.vandentoorn@uu.nl</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear List,<br>
<br>
I've just started using BioJava 4.0.0 in my projects, and wanted to ask a question about parsing large Fasta files. There is the option to read parts of the fasta file.<br>
<br>
FastaReader.process(number)<br>
<br>
The problem I have is that it's not documented what happens if the file is read in its entirety. I was expecting a null or an empty map, or even some exception, but none happened and the parser kept on producing (empty) sequences.<br>
<br>
Could anyone enlighten me? I'm probably missing the point here. Maybe there is a better way to do this (there used to be the SequenceIterator if I remember correctly, but I can't find that in version 4.0).<br>
<br>
<br>
<br>
Regards, Henk<br>
<br>
My setup: windows 7 64-bit, java 1.8.0_45 64 bit, BioJava 4.0.0 via Maven.<span class="HOEnZb"><font color="#888888"><br>
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