<div dir="ltr">Hi all,<div><br></div><div>First of all, apologies if this question has been already answered or seems silly. I'm new using BioJava and I've been trying to do this for a couple of days but I don't find any answer/solution.</div><div><br></div><div>I just want to load NCBI Taxonomy content (names.dmp and nodes.dmp, as I saw in the documentation (<a href="http://biojava.org/wiki/BioJava:BioJavaXDocs#NCBI_Taxonomy_loader.">http://biojava.org/wiki/BioJava:BioJavaXDocs#NCBI_Taxonomy_loader.</a>)) using BioJava in order to query the taxonomy data.</div><div><br></div><div>In the wiki I found an example about how to "start" the loading process (<a href="http://biojava.org/wiki/BioJava:BioJavaXDocs#NCBI_Taxonomy_data">http://biojava.org/wiki/BioJava:BioJavaXDocs#NCBI_Taxonomy_data</a>) but I realized that these classes doesn't exists in current Jars. I download all the jars and import all of them (because I didn't know if I only need core or any extra one) but the class is missing. I also see that Javadoc of 4.0 version (<a href="http://www.biojava.org/docs/api4.0.0/">http://www.biojava.org/docs/api4.0.0/</a>) doesn't have the classes mentioned in the example neither.</div><div><br></div><div>Searching I found that these classes seem to be classes of an older BioJava version (1.5, 1.7, ..).</div><div><br></div><div>I don't know if I'm doing something wrong or just is that this part of the wiki has not been updated or..? any clue?</div><div><br></div><div>If any of you, by the way, have some example of code working with ncbi taxonomy that can provide me it would be very helpful.</div><div><br></div><div>Cheers<br clear="all"><div><br></div>-- <br><div class="gmail_signature"><span style="font-family:'Times New Roman';font-size:medium">Dr. Alejandro Rodríguez González - PhD<br style="padding:0px;margin:0px"><br style="padding:0px;margin:0px"><div>Bioinformatics at Centre for Plant Biotechnology and Genomics UPM-INIA</div><div>Polytechnic University of Madrid</div><a href="http://www.alejandrorg.com" target="_blank">http://www.alejandrorg.com</a><br style="padding:0px;margin:0px">Phone: +34 </span><font face="Times New Roman" size="3">914524900 . Ext: 25550</font><div><span style="font-family:'Times New Roman';font-size:medium"><br></span></div><div><span style="font-family:'Times New Roman';font-size:medium"><br></span></div><div><span style="font-family:'Times New Roman';font-size:medium"><i>Once the game is over, the king and the pawn go back in the same box. - Italian proverb</i></span></div></div>
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