<div dir="ltr">Hi Stefan,<div><br></div><div>for your use case (save and load at server start/stop) I'd recommend the Kryo library. It will store your data as a binary. Should be only two lines of code each to persist and load the data. <a href="https://github.com/EsotericSoftware/kryo">https://github.com/EsotericSoftware/kryo</a></div><div><br></div><div>You are right, writing is not very well developed, but then there are so many utility libraries in Java that can be used for efficient serialization/deserialization in many ways, once you have an object in memory.</div><div><br></div><div>Andreas</div><div><br></div><div><br></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jan 30, 2015 at 3:01 AM, stefan harjes <span dir="ltr"><<a href="mailto:stefanharjes@yahoo.de" target="_blank">stefanharjes@yahoo.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="color:rgb(0,0,0);font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif;font-size:16px;background-color:rgb(255,255,255)">Hi biojava-l<div><br><br></div><div style="display:block"><div style="font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif;font-size:16px"><div style="font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif;font-size:16px"><div><div><div><div><div style="color:rgb(0,0,0);font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif;font-size:16px;background-color:rgb(255,255,255)"><div style="display:block"><div style="font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif;font-size:16px"><div style="font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif;font-size:16px"><div><div><div><div style="color:rgb(0,0,0);font-family:HelveticaNeue,'Helvetica Neue',Helvetica,Arial,'Lucida Grande',sans-serif;font-size:16px;background-color:rgb(255,255,255)"><div><br clear="none"></div><div dir="ltr">I have a huge number of small sequences in an Array (ListArray<Sequence<?>>) which for server start and stop I would like to store on disk. Unfortunately Sequence is not serilizable, so I searched and found that GenbankWriterHelper.writeSequences(OutputStream os, Collection<Sequence<?>> seqs) should be able to do the job. <br clear="none"></div><div dir="ltr"><div>However when looking at GenbankReaderHelper, there are no methods which correspond to the above writer method. Am I on the wrong track completely? <br></div><div><br></div><div dir="ltr">When looking at the writer/reader helpers, I think I remember reading that they are rudimentary and save only the sequence (fasta)? I would expect in such an advanced verision of biojava (4.0 is being prepared?) that there must be a standard way to serialize rich sequences/arrays of them in order to send them around on streams/Json etc?<br></div><div><br></div><div>Any help would be appreciated</div></div><div dir="ltr"><br clear="none"></div><div dir="ltr">Cheers</div><span class=""><font color="#888888"><div dir="ltr">Stefan</div><br clear="none"></font></span></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></blockquote></div><div><br></div>
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