[Biojava-l] ParseException when using interleaved Nexus file

[Richard Holland]

Could you point me to an example of an interleaved file?

And also the full stack trace of the exception that gets thrown?

cheers,
Richard

On 6 Aug 2009, at 18:03, David Johnson wrote:

> Hi everyone,
>
> A quick question about the BioJava Nexus parser. I've been trying to
> use the Nexus file parser, simply by doing something like:
>
>        NexusFileBuilder builder = new NexusFileBuilder();
>        NexusFileFormat.parseFile(builder, f);
>
> However, when parsing Nexus files that are interleaved, I get a  
> ParseException.
>
> Is there a way to setup the parser provided by BioJava to handle
> interleaved Nexus files?
>
> Thanks,
> -David
> -- 
> David Johnson
> School of Biological Sciences
> University of Reading
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> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
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--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/