[Biojava-l] pairwise alignments

[mark.schreiber at novartis.com]

Hello -

I have added another tutorial to the Biojava in anger pages. This one 
explains how to generate a pair-wise alignment between two sequences. The 
solution also demonstrates a lot of how HMMs work in biojava. You can find 
it under the Weight Matrix and Dynamic Programming section.

http://www.biojava.org/docs/bj_in_anger/
http://www.biojava.org/docs/bj_in_anger/PairAlign.htm

Enjoy!

Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com

phone +65 6722 2973
fax  +65 6722 2910