[Biojava-l] getName() method oddity

[Sylvain Foisy]

Hi,

I just notice something: the getName() method of a Sequence object does
not return the full line of comments of a FASTA-formatted file. For
example, a sequence has this comment line:

gi|14776721|ref|NT_011516.5|Hs22_11673 Homo sapiens chromosome 22
reference genomic contig

but getName() returns:

gi|14776721|ref|NT_011516.5|Hs22_11673

Is this a bug or a feature? I would like to have the full line so that I
can write a report after analysis.

Cordially

Sylvain
 
--------------------------------------------------------
Sylvain Foisy, Ph. D.
Directeur operations - Project Manager
BioneQ - Reseau quebecois de bio-informatique
U de Montreal / Genome-Quebec
Pav. Andre-Aisenstadt, Local 4351
Montreal, QC H3T 1J8
Telephone: (514) 343-6111 x.4066
Courriel: sylvain.foisy at bioneq.qc.ca
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