[Biojava-l] Parsing SwissProt flat file through BioJava

[Schreiber, Mark]

>From Memory I think there is a static method in the class SeqIOTools
that can do this for you.

- Mark

> -----Original Message-----
> From: Rahul Deshpande [mailto:rahul@molecularconnections.com] 
> Sent: Tuesday, 25 June 2002 6:21 p.m.
> To: biojava-l@biojava.org
> Cc: Santosh Kumar
> Subject: [Biojava-l] Parsing SwissProt flat file through BioJava
> 
> 
> Hello,
> 
> I am Rahul Deshpande. I work for a bio informatics company. 
> Recently I came across biojava. I have a question about biojava.
> 
> How can we read the SwissProt flat files using biojava? The 
> closest we could come was 
> org.biojava.bio.seq.io.EmblLikeFormat class which has methods 
> to return the two letter code and the remaining data in the 
> line. Can we retrieve the data for each protein in the 
> SwissProt flat file instead of reading each line by each 
> line? Are there any methods like that?
> 
> Regards,
> Rahul Deshpande
> Molecularconnections Pvt. Ltd.
> A203, Blue Cross Chambers,
> Infantry Road Cross,
> Bangalore 560001
> Ph: +(91)-80-5598502, 5327919
> 
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l@biojava.org 
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> 
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