<div dir="ltr">Yep, cath seems to be back online. I restarted the travis builds and they all pass.</div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Aug 11, 2016 at 11:15 PM, Daniel Asarnow <span dir="ltr"><<a href="mailto:dasarnow@gmail.com" target="_blank">dasarnow@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Just wanted to confirm that CathDomainTest passes for me locally. I guess Douglas made some changes since I wrote the CATH stuff several years ago; the CathTest is all commented. In any event, the URLs are correct.<span class="HOEnZb"><font color="#888888"><br><br></font></span></div><span class="HOEnZb"><font color="#888888">-da<br></font></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Aug 11, 2016 at 12:47 PM, Daniel Asarnow <span dir="ltr"><<a href="mailto:dasarnow@gmail.com" target="_blank">dasarnow@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Hi Spencer,<br></div><div>Sometimes the CATH server is a little flaky depending on one's ISP and presumably issues on their end.<br><br></div><div>I can load:<br><a href="http://download.cathdb.info/cath/releases/all-releases/v3_5_0/cath-classification-data/cath-domain-list-v3_5_0.txt" target="_blank">http://download.cathdb.info/ca<wbr>th/releases/all-releases/v3_5_<wbr>0/cath-classification-data/cat<wbr>h-domain-list-v3_5_0.txt</a><br><br></div><div>In my web browser (from UCSF) right now. Does the test still fail on the CI server?<br><br></div><div>I'm double checking the URLs haven't changed, but I have a feeling the tests will pass now.<br></div><div><br></div><div>Best,<br></div><div>-da<br></div><div><br></div><br></div><div class="gmail_extra"><br><div class="gmail_quote"><div><div>On Thu, Aug 11, 2016 at 2:15 AM, Spencer Bliven <span dir="ltr"><<a href="mailto:spencer.bliven@gmail.com" target="_blank">spencer.bliven@gmail.com</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div><div dir="ltr">CATH seems to be down, so tests are failing.<div><br></div><div><br><div class="gmail_quote">---------- Forwarded message ----------<br>From: <b class="gmail_sendername">Travis CI</b> <span dir="ltr"><<a href="mailto:builds@travis-ci.org" target="_blank">builds@travis-ci.org</a>></span><br>Date: Thu, Aug 11, 2016 at 10:14 AM<br>Subject: Errored: biojava/biojava#1475 (master - 7b072a0)<br>To: <a href="mailto:spencer@bliven.us" target="_blank">spencer@bliven.us</a><br><br><br><u></u>

  
    
  

  <div>
    <div style="font-family:"Helvetica Neue",Helvetica,Arial,sans-serif;font-size:16px;color:#808080;width:570px;margin:0 auto">
      <table style="padding:0px;border:0px;width:100%;color:#606060;font-size:20px;margin-bottom:15px;margin-top:15px">
        <tbody><tr style="padding:0px;border:0px">
          <td style="padding:0px;border:0px;vertical-align:middle">
<img src="https://avatars.githubusercontent.com/u/237402?s=40&d=https%3A%2F%2Ftravis-ci.org%2Fimages%2Fmailer%2Fmascot-avatar-40px.png" style="vertical-align:middle;width:40px;min-height:40px"> <span style="vertical-align:middle;margin-left:3px"><strong><a href="https://travis-ci.org/biojava/biojava" style="text-decoration:underline;color:#606060" target="_blank">biojava / biojava</a></strong> (<a href="https://github.com/biojava/biojava/tree/master" style="text-decoration:underline;color:#606060" target="_blank">master</a>)</span>
</td>
        </tr>
      </tbody></table>
      <div style="border-radius:5px;padding:0px;width:570px;font-size:13px">
        <div>
          <table style="padding:0px;border:0px;width:100%;border-spacing:0">
            <thead>
              <tr style="padding:0px;border:0px;font-weight:700;font-size:18px;background-color:#cccccc;color:#707070">
                <td style="border:0px;padding:0px 20px 0px 0px;border-top:1px solid #808080;border-bottom:1px solid #adadad;width:50px;padding:0px;text-align:center;vertical-align:middle;padding-top:5px;border-left:1px solid #606060;border-top-left-radius:5px"><div style="width:25px;min-height:30px;margin-left:15px;margin-top:0px;vertical-align:middle"><img src="https://travis-ci.org/images/mailer/error.png" height="25" width="25"></div></td>
                <td style="padding:0px;border:0px;padding:0px 20px 0px 0px;vertical-align:middle;border-top:1px solid #808080;border-bottom:1px solid #adadad">
<span style="display:inline-block;margin-top:12px;vertical-align:middle"><a href="https://travis-ci.org/biojava/biojava/builds/151434935" style="text-decoration:none;font-weight:bold;color:#57769d;text-decoration:underline;color:#707070" target="_blank">Build #1475 has errored.</a></span><img src="https://travis-ci.org/images/mailer/arrow-error.png" style="float:right" height="45">
</td>
                <td style="padding:0px;border:0px;font-weight:normal;font-size:12px;padding:0px 20px 0px 0px;vertical-align:middle;border-top:1px solid #808080;border-bottom:1px solid #adadad;border-right:1px solid #606060;border-top-right-radius:5px" align="right">
<div style="vertical-align:middle;padding:0px;display:inline-block;width:20px;min-height:20px"><img src="https://travis-ci.org/images/mailer/stopwatch-error.png" height="20" width="20"></div> <span style="vertical-align:middle">23 minutes and 19 seconds</span>
</td>
              </tr>
            </thead>
            <tbody style="margin-bottom:40px">
              <tr style="padding:0px;border:0px">
                <td style="border:0px;padding:10px 20px 10px 0px;height:20px;width:50px;padding:0px;border-left:1px solid #adadad;padding-top:20px;padding-bottom:5px;text-align:center"><img src="https://secure.gravatar.com/avatar/fd28637c27a9ad5539b8ac5d113a5a2a?s=15&d=https%3A%2F%2Ftravis-ci.org%2Fimages%2Fmailer%2Fmascot-avatar-15px.png"></td>
                <td style="padding:0px;border:0px;color:#808080;padding:10px 20px 10px 0px;height:20px;padding-top:20px;padding-bottom:5px"><strong>Spencer Bliven</strong></td>
                <td style="padding:0px;border:0px;color:#808080;padding:10px 20px 10px 0px;height:20px;border-right:1px solid #adadad;padding-top:20px;padding-bottom:5px" align="right">
<a href="https://github.com/biojava/biojava/commit/7b072a0cb66daae456aaf4a1ee316b358ecf0282" style="text-decoration:underline;text-decoration:none;font-weight:bold;color:#57769d" target="_blank">7b072a0</a> <a href="https://github.com/biojava/biojava/compare/02ac76c007ac...7b072a0cb66d" style="text-decoration:underline;text-decoration:none;font-weight:bold;color:#57769d" target="_blank">Changeset →</a>
</td>
              </tr>
              <tr style="padding:0px;border:0px">
                <td style="border:0px;padding:10px 20px 10px 0px;height:20px;width:50px;padding:0px;border-left:1px solid #adadad;border-bottom-left-radius:5px;border-bottom:1px solid #adadad"> </td>
                <td colspan="2" style="padding:0px;border:0px;color:#808080;padding:10px 20px 10px 0px;height:20px;border-right:1px solid #adadad;padding-bottom:20px;padding-top:0px;border-bottom:1px solid #adadad;border-bottom-right-radius:5px">Merge pull request #556 from sbliven/master<br><br>Merge bugfixes-4.2</td>
              </tr>
              </tbody>
          </table>
        </div>
      </div>

      <div style="width:528px;padding:10px 20px;border:1px solid #adadad;border-radius:5px;font-size:12px;margin-bottom:0px;background-color:#fbfddc;margin-top:20px">
        <span style="color:#808080">
          <b>System message:</b>
          <p style="margin-top:5px;margin-bottom:0px">
            We are seeing build failures due to new sudo-enabled Precise and Trusty images. See more details <a href="https://www.traviscistatus.com/incidents/11hp8bhkrkn7" style="text-decoration:underline" target="_blank">here</a>. Thank you for your enduring patience.          </p>
        </span>
      </div>

      <div style="padding-top:10px;width:570px">
        <span>
          <div style="margin-top:20px;border-radius:5px;border:1px solid #adadad;font-size:12px;padding:10px 20px;width:528px">
            <p style="color:#808080;margin-top:0px;margin-bottom:5px"><strong style="font-size:14px">Want to know about upcoming build environment updates?</strong></p>
            <p style="color:#808080;margin-top:0px;margin-bottom:5px">Would you like to stay up-to-date with the upcoming Travis CI build environment updates?
              We set up a mailing list for you!
              Sign up <a href="http://eepurl.com/9OCsP" style="text-decoration:underline;color:#606060" target="_blank">here</a>.
            </p>
          </div>
        </span>
      </div>

      <table style="padding:0px;border:0px;width:100%;background-color:#e9e6e7;border-radius:5px;border:1px solid #adadad;padding:10px;margin-top:20px;font-size:12px;width:570px;line-height:16px" border="0">
        <tbody><tr style="padding:0px;border:0px">
          <td style="padding:0px;border:0px">
            <img src="https://travis-ci.org/images/mailer/email-footer-travis-logo.png" style="width:50px;min-height:50px">
          </td>
          <td style="padding:0px;border:0px;color:#808080">
            <a href="https://docs.travis-ci.com" style="text-decoration:underline;color:#606060" target="_blank">Documentation</a> about Travis CI<br>
            For help please join our IRC channel <a style="text-decoration:underline;color:#606060">irc.freenode.net#travis</a>.<br>
            Choose who receives these build notification emails in your <a href="https://docs.travis-ci.com/user/notifications" style="text-decoration:underline;color:#606060" target="_blank">configuration file</a>.
          </td>
        </tr>
      </tbody></table>

      <div style="padding-top:10px;width:570px">
        <img src="https://travis-ci.org/images/mailer/travis-mascot.png" style="float:right;margin-top:10px;margin-right:20px" width="80">
        <div style="margin-top:20px;border-radius:5px;border:1px solid #adadad;font-size:12px;padding:10px 20px;width:528px">
          <p style="color:#808080;margin-top:0px;margin-bottom:5px"><strong style="font-size:14px">Would you like to test your private code?</strong></p>
          <p style="color:#808080;margin-top:0px;margin-bottom:5px"><a href="https://travis-ci.com?utm_source=build_email_footer&utm_campaign=travis-ci.org&utm_medium=email" style="text-decoration:underline;color:#606060" target="_blank">Travis CI for Private Projects</a> could be your new best friend!</p>
        </div>
      </div>

    </div>
    
</div>



</div><br></div></div>
<br></div></div>______________________________<wbr>_________________<br>
biojava-dev mailing list<br>
<a href="mailto:biojava-dev@mailman.open-bio.org" target="_blank">biojava-dev@mailman.open-bio.o<wbr>rg</a><br>
<a href="http://mailman.open-bio.org/mailman/listinfo/biojava-dev" rel="noreferrer" target="_blank">http://mailman.open-bio.org/ma<wbr>ilman/listinfo/biojava-dev</a><br></blockquote></div><br></div>
</blockquote></div><br></div>
</div></div></blockquote></div><br></div>