<div dir="ltr"><div><div>Hi Jose,<br>Interesting! I'm also working on commit 154edb7f9a5e9e54f25df3e27aeb169b4fab7799 and below is the result. At a first glance it does not seem a network problem, it downloads maven-metadata.xml. <br></div>What do you think?<br></div>Paolo<br><div><div><br>-------------------------------------------------------<br> T E S T S<br>-------------------------------------------------------<br>Running org.biojava.nbio.genome.AppTest<br>Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec - in org.biojava.nbio.genome.AppTest<br>Running org.biojava.nbio.genome.FeatureListTest<br>Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.502 sec - in org.biojava.nbio.genome.FeatureListTest<br>Running org.biojava.nbio.genome.GeneFeatureHelperTest<br>18:04:40 [main] INFO org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading: C:\Users\pavanpa\Documents\Programming_workspace\biojava\biojava-genome\src\test\resources\volvox.gff3<br>18:04:41 [main] INFO org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading: src/test/resources/amphimedon.gff3<br>18:04:41 [main] INFO org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading: C:\Users\pavanpa\Documents\Programming_workspace\biojava\biojava-genome\src\test\resources\volvox.gff3<br>18:04:41 [main] INFO org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading: C:\Users\pavanpa\Documents\Programming_workspace\biojava\biojava-genome\src\test\resources\volvox.gff3<br>18:04:41 [main] INFO org.biojava.nbio.genome.GeneFeatureHelperTest - Note [protein kinase]<br>18:04:41 [main] INFO org.biojava.nbio.genome.GeneFeatureHelper - Gene EDEN found at ctgA 1050 9000 POSITIVE<br>18:04:41 [main] INFO org.biojava.nbio.genome.GeneFeatureHelper - Gene rna-Apple3 found at ctgA 18000 21200 POSITIVE<br>Tests run: 6, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.598 sec <<< FAILURE! - in org.biojava.nbio.genome.GeneFeatureHelperTest<br>testOutputFastaSequenceLengthGFF3(org.biojava.nbio.genome.GeneFeatureHelperTest) Time elapsed: 0.199 sec <<< FAILURE!<br>junit.framework.AssertionFailedError: actual file is shorter<br> at junit.framework.Assert.fail(Assert.java:57)<br> at junitx.framework.FileAssert.assertBinaryEquals(FileAssert.java:240)<br> at org.biojava.nbio.genome.GeneFeatureHelperTest.testOutputFastaSequenceLengthGFF3(GeneFeatureHelperTest.java:105)<br><br></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">2015-07-14 14:44 GMT+02:00 Jose Manuel Duarte <span dir="ltr"><<a href="mailto:jose.duarte@psi.ch" target="_blank">jose.duarte@psi.ch</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
It works for me (on commit 154edb7f9a5e9e).<br>
<br>
Could that be some kind of network problem?<br>
<br>
Jose<div><div class="h5"><br>
<br>
<br>
<div>On 14.07.2015 14:32, Paolo Pavan wrote:<br>
</div>
</div></div><blockquote type="cite"><div><div class="h5">
<div dir="ltr">
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<div>
<div>Hello,<br>
</div>
It seems that testOutputFastaSequenceLengthGFF3 fails in
biojava-genome 4.1.1 snapshot.<br>
</div>
Is this happening to someone else?<br>
<br>
</div>
bye bye,<br>
</div>
Paolo<br>
</div>
<br>
<fieldset></fieldset>
<br>
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