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Maybe some files left over from a broken run? Try see if cleaning
(mvn clean) and then building again does the trick.<br>
<br>
Jose<br>
<br>
<br>
<div class="moz-cite-prefix">On 14.07.2015 18:11, Paolo Pavan wrote:<br>
</div>
<blockquote
cite="mid:CAD2LbkxZDwPHNmqRNsXNFQVBxZbWqAs=DXhUR8aNbLh-BaNTeg@mail.gmail.com"
type="cite">
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<div>Hi Jose,<br>
Interesting! I'm also working on commit
154edb7f9a5e9e54f25df3e27aeb169b4fab7799 and below is the
result. At a first glance it does not seem a network
problem, it downloads maven-metadata.xml. <br>
</div>
What do you think?<br>
</div>
Paolo<br>
<div>
<div><br>
-------------------------------------------------------<br>
T E S T S<br>
-------------------------------------------------------<br>
Running org.biojava.nbio.genome.AppTest<br>
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.001 sec - in org.biojava.nbio.genome.AppTest<br>
Running org.biojava.nbio.genome.FeatureListTest<br>
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time
elapsed: 0.502 sec - in
org.biojava.nbio.genome.FeatureListTest<br>
Running org.biojava.nbio.genome.GeneFeatureHelperTest<br>
18:04:40 [main] INFO
org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading:
C:\Users\pavanpa\Documents\Programming_workspace\biojava\biojava-genome\src\test\resources\volvox.gff3<br>
18:04:41 [main] INFO
org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading:
src/test/resources/amphimedon.gff3<br>
18:04:41 [main] INFO
org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading:
C:\Users\pavanpa\Documents\Programming_workspace\biojava\biojava-genome\src\test\resources\volvox.gff3<br>
18:04:41 [main] INFO
org.biojava.nbio.genome.parsers.gff.GFF3Reader - Reading:
C:\Users\pavanpa\Documents\Programming_workspace\biojava\biojava-genome\src\test\resources\volvox.gff3<br>
18:04:41 [main] INFO
org.biojava.nbio.genome.GeneFeatureHelperTest - Note
[protein kinase]<br>
18:04:41 [main] INFO
org.biojava.nbio.genome.GeneFeatureHelper - Gene EDEN found
at ctgA 1050 9000 POSITIVE<br>
18:04:41 [main] INFO
org.biojava.nbio.genome.GeneFeatureHelper - Gene rna-Apple3
found at ctgA 18000 21200 POSITIVE<br>
Tests run: 6, Failures: 1, Errors: 0, Skipped: 0, Time
elapsed: 0.598 sec <<< FAILURE! - in
org.biojava.nbio.genome.GeneFeatureHelperTest<br>
testOutputFastaSequenceLengthGFF3(org.biojava.nbio.genome.GeneFeatureHelperTest)
Time elapsed: 0.199 sec <<< FAILURE!<br>
junit.framework.AssertionFailedError: actual file is shorter<br>
at junit.framework.Assert.fail(Assert.java:57)<br>
at
junitx.framework.FileAssert.assertBinaryEquals(FileAssert.java:240)<br>
at
org.biojava.nbio.genome.GeneFeatureHelperTest.testOutputFastaSequenceLengthGFF3(GeneFeatureHelperTest.java:105)<br>
<br>
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<div class="gmail_extra"><br>
<div class="gmail_quote">2015-07-14 14:44 GMT+02:00 Jose Manuel
Duarte <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:jose.duarte@psi.ch" target="_blank">jose.duarte@psi.ch</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000"> It works for me (on
commit 154edb7f9a5e9e).<br>
<br>
Could that be some kind of network problem?<br>
<br>
Jose
<div>
<div class="h5"><br>
<br>
<br>
<div>On 14.07.2015 14:32, Paolo Pavan wrote:<br>
</div>
</div>
</div>
<blockquote type="cite">
<div>
<div class="h5">
<div dir="ltr">
<div>
<div>
<div>
<div>Hello,<br>
</div>
It seems that
testOutputFastaSequenceLengthGFF3 fails in
biojava-genome 4.1.1 snapshot.<br>
</div>
Is this happening to someone else?<br>
<br>
</div>
bye bye,<br>
</div>
Paolo<br>
</div>
<br>
<fieldset></fieldset>
<br>
</div>
</div>
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