[Biojava-dev] [Biojava-l] BioJava 3.0.8 released

[Andreas Prlic]

that would be great. after all there were some bug fixes...

Thanks,

Andreas


On Tue, Mar 25, 2014 at 3:41 PM, Michael Heuer <heuermh at gmail.com> wrote:

> Nice work, Andreas.
>
> Should I cut a new biojava-legacy release as well?  There aren't as many
> changes
>
>
> https://github.com/biojava/biojava-legacy/compare/biojava-legacy-1.8.4...master
>
>    michael
>
>
> On Tue, Mar 25, 2014 at 5:34 PM, Andreas Prlic <andreas at sdsc.edu> wrote:
> > == BioJava 3.0.8 released ==
> >
> > BioJava 3.0.8 was released on March 25th 2014 and is available from
> > http://biojava.org/wiki/BioJava:Download as well as from the
> > BioJava maven repository at http://www.biojava.org/download/maven/
> >
> > This release would not have been possible without contributions from
> > 13 developers, thanks to all for their support!
> >
> > BioJava 3.0.8 includes a lot of new features as well as numerous bug
> fixes
> > and improvements.
> >
> > New Features:
> >
> >  - new Genbank writer
> >  - new parser for Karyotype file from UCSC
> >  - new parser for Gene locations from UCSC
> >  - new parser for Gene names file from genenames.org
> >  - new module for Cox regression code for survival analysis
> >  - new calculation of accessible surface area (ASA)
> >  - new module for parsing .OBO files (ontologies)
> >  - improved representation of SCOP and Berkeley-SCOP classifications
> >
> > For a detailed comparison see here:
> > https://github.com/biojava/biojava/compare/biojava-3.0.7...biojava-3.0.8
> >
> > For the next release we are planning some refactoring and removal of code
> > that has been deprecated for a long time. As such the next release will
> be
> > named 3.1.0.
> >
> > About BioJava:
> >
> > BioJava is a mature open-source project that provides a framework for
> > processing of biological data. BioJava contains powerful analysis and
> > statistical routines, tools for parsing common file formats, and
> > packages for manipulating sequences and 3D structures. It enables
> > rapid bioinformatics application development in the Java programming
> > language.
> >
> > Happy BioJava-ing,
> >
> > Andreas
> > _______________________________________________
> > Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/biojava-l
>



-- 
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Dr. Andreas Prlic
Senior Scientist, RCSB PDB Protein Data Bank
University of California, San Diego
(+1) 858.246.0526
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