[Biojava-dev] How to read a protein seq alignment file (FASTA)

dnaki1 at cox.net dnaki1 at cox.net
Fri Jun 29 18:22:25 UTC 2012


Hi,
I would like to use biojava 3 to read a protein multiple sequence alignment file in FASTA format containing 5 sequences.
Is this possible? It appears Profile<S,C> is the alignment interface, but I can't find an implementation that allows me to add more than 2 aligned sequences.
Any help appreciated. Thanks
Don Naki



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