[Biojava-dev] AbstractMethodError while enriching a sequence

gwaldon at geneinfinity.org gwaldon at geneinfinity.org
Tue Mar 3 05:27:55 UTC 2009


Hi,

I am catching this at:

java.lang.AbstractMethodError: org.biojava.bio.seq.projection.TranslateFlipContext__org_biojavax_bio_seq_RichFeature.getAnnotation()Lorg/biojavax/RichAnnotation;
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at org.biojava.bio.seq.impl.TemplateUtils.populate(TemplateUtils.java:125)
        at org.biojava.bio.seq.impl.TemplateUtils.makeTemplate(TemplateUtils.java:135)
        at org.biojava.bio.seq.projection.ProjectedFeature.makeTemplate(ProjectedFeature.java:159)
        at org.biojavax.bio.seq.RichSequence$Tools.enrich(RichSequence.java:588)

while enriching a sequence, which was actually a SequenceTools.subsequence of a RichSequence.

I am not sure what to do with this error. Has someone any suggestion?

George



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