[Biojava-dev] maven and custom jar

[Andreas Prlic]

Hi Raphael,

Thanks for the link to the Jmol maven. Problem is it is a bit out of
date and the latest release version is already two increments higher.
I will post to the Jmol list about getting a more up to date version
and if that does not work out, I will do something via the BioJava
servers...

Thanks,
Andreas





On Tue, Dec 22, 2009 at 1:35 PM, Raphael André Bauer
<raphael.andre.bauer at gmail.com> wrote:
> On Mon, Dec 21, 2009 at 5:29 AM, Andreas Prlic <andreas at sdsc.edu> wrote:
>> Hi,
>>
>> I am about to commit some major new features to the protein structure
>> modules. For the visualisation of these, the Jmol applet is being
> cool :)
>> used. As such I would like to add the dependency on it to the
>> structure modules. Since I could not find a JmolApplet.jar in maven, I
>> currently install it locally via mvn install:install-file .  What is
>> the easiest way to get this set up and installed automatically, if
>> somebody else checks out the code from SVN ? Shall we just document
>> the line that installs Jmol, or should there be a custom target in the
>
> Hi Andreas,
>
>
> a quick scan gave me this (unofficial imho) repository:
> http://wwmm.ch.cam.ac.uk/maven2/net/sourceforge/jmol/jmol/ ready to be
> referenced by your pom.xml. A second idea is to set up a biojava jmol
> repository (depending on the license of Jmol) right at the biojava
> servers that you reference in your pom.xml. A third (and maybe the
> best idea) is to ask the Jmol team to set up a maven repository, or to
> upload artifacts to the central repository. The people behind Jmol are
> really helpful and I am pretty sure they are willing to help.
>
>
> But maybe there are more clever ideas how to work around that problem...
>
> Raphael
>
>
>
> maybe this helps:
>
>
>
>
>> pom?
>>
>> Andreas
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>>
>