[Biojava-dev] reading protein

[mark.schreiber at group.novartis.com]

I notice that the SeqIOTools.readFastaProtein() method uses the 
protein-term alphabet. Strangely the fileToBiojava() method uses the 
protein alphabet (when reading protein files). Would anyone object 
strongly if I modified it to use the protein-term alphabet for added 
flexibility??

- Mark

Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com

phone +65 6722 2973
fax  +65 6722 2910