[Biojava-dev] [biojava-builder] BioJava nightly build report

autobuilder at derkholm.net autobuilder at derkholm.net
Fri Aug 22 00:18:38 EDT 2003


BioJava automatic build system, run 20030822
This is an experimental system, contact Thomas Down if you see any problems.

Binary build: OK
Javadocs build: OK
Core test suite: OK (results attached)

A snapshot release has been made at:

      http://www.derkholm.net/autobuild/

The following files were modified in the last 24 hours:

  * biojava-live/src/org/biojava/bio/seq/impl/RevCompSequence.java
  * biojava-live/src/org/biojava/bio/seq/io/GenbankContext.java
  * biojava-live/src/org/biojava/bio/seq/io/GenbankFileFormer.java
  * biojava-live/src/org/biojava/bio/symbol/AbstractAlphabet.java
  * biojava-live/src/org/biojava/bio/symbol/AbstractSymbolList.java
  * biojava-live/src/org/biojava/bio/symbol/Alphabet.java

A patch file reflecting these changes is attached.
-------------- next part --------------
Index: biojava-live/src/org/biojava/bio/seq/impl/RevCompSequence.java
diff -u biojava-live/src/org/biojava/bio/seq/impl/RevCompSequence.java:1.4 biojava-live/src/org/biojava/bio/seq/impl/RevCompSequence.java:1.5
--- biojava-live/src/org/biojava/bio/seq/impl/RevCompSequence.java:1.4	Tue Jul  8 16:20:34 2003
+++ biojava-live/src/org/biojava/bio/seq/impl/RevCompSequence.java	Thu Aug 21 06:44:20 2003
@@ -42,7 +42,7 @@
  * @author Thomas Down
  */
 public class RevCompSequence
-        extends SimpleSequence
+    extends SimpleSequence
 {
     private ProjectedFeatureHolder pfh;
     protected Sequence origSeq;
@@ -53,14 +53,16 @@
     *  the other contructor that sets these.
     */
     
-    public RevCompSequence(Sequence seq)throws IllegalAlphabetException{
+    public RevCompSequence(Sequence seq)
+        throws IllegalAlphabetException
+    {
         this(seq,seq.getURN(),seq.getName(),seq.getAnnotation());
     }
     
     
     public RevCompSequence(Sequence seq, String urn, String name, Annotation annotation)throws IllegalAlphabetException {
         super(DNATools.reverseComplement(seq),urn,name,annotation);
-        pfh = new ProjectedFeatureHolder(new TranslateFlipContext(seq,this,seq.length()+1,true));
+        pfh = new ProjectedFeatureHolder(new TranslateFlipContext(this,seq,seq.length()+1,true));
         origSeq = seq;
     }
     
@@ -87,8 +89,17 @@
     public Iterator features(){
         return pfh.features();
     }
+    
     public int countFeatures(){
         return pfh.countFeatures();
+    }
+    
+    public FeatureHolder filter(FeatureFilter ff) {
+        return pfh.filter(ff);
+    }
+    
+    public FeatureHolder filter(FeatureFilter ff, boolean recurse) {
+        return pfh.filter(ff, recurse);
     }
     
     /**
Index: biojava-live/src/org/biojava/bio/seq/io/GenbankContext.java
diff -u biojava-live/src/org/biojava/bio/seq/io/GenbankContext.java:1.1 biojava-live/src/org/biojava/bio/seq/io/GenbankContext.java:1.2
--- biojava-live/src/org/biojava/bio/seq/io/GenbankContext.java:1.1	Wed May 21 12:42:04 2003
+++ biojava-live/src/org/biojava/bio/seq/io/GenbankContext.java	Thu Aug 21 16:18:13 2003
@@ -71,7 +71,8 @@
 
 	this.symParser = theSymbolParser;
 	this.streamParser = symParser.parseStream(listener);
-        ((ParseErrorSource)(this.listener)).addParseErrorListener(this);
+         if (this.listener instanceof ParseErrorSource)
+           ((ParseErrorSource)(this.listener)).addParseErrorListener(this);
     }
 
     /**
Index: biojava-live/src/org/biojava/bio/seq/io/GenbankFileFormer.java
diff -u biojava-live/src/org/biojava/bio/seq/io/GenbankFileFormer.java:1.21 biojava-live/src/org/biojava/bio/seq/io/GenbankFileFormer.java:1.22
--- biojava-live/src/org/biojava/bio/seq/io/GenbankFileFormer.java:1.21	Sun Jul 13 19:35:35 2003
+++ biojava-live/src/org/biojava/bio/seq/io/GenbankFileFormer.java	Thu Aug 21 11:22:46 2003
@@ -326,9 +326,13 @@
         {
             ub.setLength(0);
             ub.append("ACCESSION   ");
-            for (Iterator ai = ((List) value).iterator(); ai.hasNext();)
-            {
-                ub.append((String) ai.next());
+            if(value instanceof List) {
+                for (Iterator ai = ((List) value).iterator(); ai.hasNext();)
+                {
+                    ub.append((String) ai.next());
+                }
+            } else {
+                ub.append(value);
             }
             acb = new StringBuffer(ub.substring(0));
         }
Index: biojava-live/src/org/biojava/bio/symbol/AbstractAlphabet.java
diff -u biojava-live/src/org/biojava/bio/symbol/AbstractAlphabet.java:1.29 biojava-live/src/org/biojava/bio/symbol/AbstractAlphabet.java:1.30
--- biojava-live/src/org/biojava/bio/symbol/AbstractAlphabet.java:1.29	Tue Jul 15 15:19:17 2003
+++ biojava-live/src/org/biojava/bio/symbol/AbstractAlphabet.java	Thu Aug 21 16:19:11 2003
@@ -58,6 +58,7 @@
  *
  * @author Matthew Pocock
  * @author Greg Cox
+ * @author Francois Pepin
  * @since 1.1
  */
 public abstract class AbstractAlphabet
@@ -120,7 +121,17 @@
 		    toke = new CrossProductTokenization(this);
 		}
 		putTokenization(name, toke);
-	    } else {
+	    } else if (name.equals("default")) {
+              
+              if (tokenizationsByName.containsKey("token"))
+                toke= (SymbolTokenization)tokenizationsByName.get("token");
+              else
+                toke= (SymbolTokenization)getTokenization("name");
+              putTokenization(name, toke);
+              
+            }
+            else
+            {
 		throw new NoSuchElementException("There is no tokenization '" + name +
 						 "' defined in alphabet " + getName());
 	    }
Index: biojava-live/src/org/biojava/bio/symbol/AbstractSymbolList.java
diff -u biojava-live/src/org/biojava/bio/symbol/AbstractSymbolList.java:1.26 biojava-live/src/org/biojava/bio/symbol/AbstractSymbolList.java:1.27
--- biojava-live/src/org/biojava/bio/symbol/AbstractSymbolList.java:1.26	Wed Aug 13 20:36:58 2003
+++ biojava-live/src/org/biojava/bio/symbol/AbstractSymbolList.java	Thu Aug 21 16:19:11 2003
@@ -98,7 +98,7 @@
 
   public String seqString() {
       try {
-          SymbolTokenization toke = getAlphabet().getTokenization("token");
+          SymbolTokenization toke = getAlphabet().getTokenization("default");
           return toke.tokenizeSymbolList(this);
       } catch (BioException ex) {
           throw new BioRuntimeException("Couldn't tokenize sequence", ex);
Index: biojava-live/src/org/biojava/bio/symbol/Alphabet.java
diff -u biojava-live/src/org/biojava/bio/symbol/Alphabet.java:1.23 biojava-live/src/org/biojava/bio/symbol/Alphabet.java:1.24
--- biojava-live/src/org/biojava/bio/symbol/Alphabet.java:1.23	Mon Jul 28 09:06:01 2003
+++ biojava-live/src/org/biojava/bio/symbol/Alphabet.java	Thu Aug 21 16:19:11 2003
@@ -194,7 +194,15 @@
    * uses the symbol token characters to translate a string into a
    * SymbolList. Likewise, there should be a SymbolTokenization under the name
    * 'name' that uses symbol names to identify symbols. Any other names may
-   * also be defined, but the behaviour of the returned SymbolTokenization is not defined here.
+   * also be defined, but the behaviour of the returned SymbolTokenization is
+   * not defined here.
+   * </p>
+   * <p>
+   * A SymbolTokenization under the name 'default' should be defined for all
+   * sequences, that determines the behavior when printing out a
+   * sequence. Standard behavior is to define the 'token' SymbolTokenization
+   * as default if it exists, else to define the 'name' SymbolTokenization as
+   * the default, but others are possible.
    * </p>
    *
    * @param name  the name of the parser
-------------- next part --------------
Buildfile: build.xml

init:
     [echo] JUnit present:                   true
     [echo] JUnit supported by Ant:          true

prepare:

prepare-core:

prepare-src:

compile:

package:

compile-tests:
    [javac] Compiling 95 source files to /home/thomas/bjtemp/biojava-20030822/ant-build/classes/tests
    [javac] depend attribute is not supported by the modern compiler

runtests:
    [junit] Running org.biojava.directory.OBDARegistryParserTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.066 sec
    [junit] Running org.biojava.directory.SystemRegistryTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.632 sec
    [junit] Running org.biojava.directory.RegistryConfigurationTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.03 sec
    [junit] Running org.biojava.bio.symbol.SymbolSerializationTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.721 sec
    [junit] Running org.biojava.bio.symbol.UkkonenSuffixTreeTest
    [junit] Tests run: 5, Failures: 0, Errors: 2, Time elapsed: 1.892 sec
    [junit] Running org.biojava.bio.symbol.NameTokenizationTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.609 sec
    [junit] Running org.biojava.bio.symbol.IntegerAlphabetTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 1.568 sec
    [junit] Running org.biojava.bio.symbol.SymbolListTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 5.268 sec
    [junit] Running org.biojava.bio.symbol.SimpleSymbolListTest
    [junit] Tests run: 10, Failures: 0, Errors: 0, Time elapsed: 1.608 sec
    [junit] Running org.biojava.bio.symbol.PackedDnaSymbolListTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.676 sec
    [junit] Running org.biojava.bio.symbol.CodonPrefToolsTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 3.414 sec
    [junit] Running org.biojava.bio.symbol.MotifToolsTest
    [junit] Tests run: 13, Failures: 0, Errors: 0, Time elapsed: 1.636 sec
    [junit] Running org.biojava.bio.symbol.RangeLocationTest
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.089 sec
    [junit] Running org.biojava.bio.symbol.BetweenLocationTest
    [junit] Tests run: 34, Failures: 0, Errors: 0, Time elapsed: 0.12 sec
    [junit] Running org.biojava.bio.symbol.SimpleCodonPrefTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 1.453 sec
    [junit] Running org.biojava.bio.symbol.SimpleWobbleDistributionTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.433 sec
    [junit] Running org.biojava.bio.symbol.CrossProductAlphabetIndexTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 38.675 sec
    [junit] Running org.biojava.bio.symbol.TranslationTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 2.85 sec
    [junit] Running org.biojava.bio.symbol.GappedSymbolListTest
    [junit] Tests run: 9, Failures: 0, Errors: 0, Time elapsed: 1.604 sec
    [junit] Running org.biojava.bio.symbol.DoubleAlphabetTest
    [junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 1.562 sec
    [junit] Running org.biojava.bio.symbol.AlphabetSerializationTest
    [junit] Tests run: 7, Failures: 0, Errors: 1, Time elapsed: 2.497 sec
    [junit] Running org.biojava.bio.symbol.CompoundLocationTest
    [junit] Tests run: 11, Failures: 0, Errors: 0, Time elapsed: 0.3 sec
    [junit] Running org.biojava.bio.symbol.CrossProductTokenizationTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.614 sec
    [junit] Running org.biojava.bio.symbol.AlphabetManagerTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 2.18 sec
    [junit] Running org.biojava.bio.symbol.MergeLocationTest
    [junit] Tests run: 6, Failures: 0, Errors: 0, Time elapsed: 0.105 sec
    [junit] Running org.biojava.bio.symbol.CircularLocationTest
    [junit] Tests run: 9, Failures: 0, Errors: 0, Time elapsed: 0.146 sec
    [junit] Running org.biojava.bio.symbol.PointLocationTest
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.1 sec
    [junit] Running org.biojava.bio.seq.db.EmblCDROMIndexStoreTest
    [junit] Tests run: 11, Failures: 0, Errors: 0, Time elapsed: 2.388 sec
    [junit] Running org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.075 sec
    [junit] Running org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.075 sec
    [junit] Running org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.067 sec
    [junit] Running org.biojava.bio.seq.impl.ViewSeqSerializationTest
    [junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 2.44 sec
    [junit] Running org.biojava.bio.seq.impl.SubSequenceTest
    [junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 2.461 sec
    [junit] Running org.biojava.bio.seq.impl.GappedSequenceTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 2.216 sec
    [junit] Running org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest
    [junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 1.845 sec
    [junit] Running org.biojava.bio.seq.MergeFeatureHolderTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.18 sec
    [junit] Running org.biojava.bio.seq.io.SmartSequenceBuilderTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 6.235 sec
    [junit] Running org.biojava.bio.seq.io.agave.AGAVEHandlerTest
    [junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 2.448 sec
    [junit] Running org.biojava.bio.seq.io.MSFAlignmentFormatTest
    [junit] Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.668 sec
    [junit] Running org.biojava.bio.seq.io.LocationFormatterTest
    [junit] Tests run: 26, Failures: 0, Errors: 0, Time elapsed: 2.802 sec
    [junit] Running org.biojava.bio.seq.io.filterxml.FilterXMLTest
    [junit] Tests run: 12, Failures: 0, Errors: 0, Time elapsed: 1.436 sec
    [junit] Running org.biojava.bio.seq.io.SeqIOToolsTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 6.403 sec
    [junit] Running org.biojava.bio.seq.project.ProjectedFeatureHolderTest
    [junit] Tests run: 6, Failures: 0, Errors: 0, Time elapsed: 2.331 sec
    [junit] Running org.biojava.bio.seq.SeqSerializationTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 2.037 sec
    [junit] Running org.biojava.bio.seq.SimpleAssemblyTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 2.316 sec
    [junit] Running org.biojava.bio.seq.RNAToolsTest
    [junit] Tests run: 34, Failures: 0, Errors: 0, Time elapsed: 2.995 sec
    [junit] Running org.biojava.bio.seq.CircularSequenceTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.267 sec
    [junit] Running org.biojava.bio.seq.filter.FilterTransformerTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.588 sec
    [junit] Running org.biojava.bio.seq.DNAToolsTest
    [junit] Tests run: 10, Failures: 0, Errors: 0, Time elapsed: 1.618 sec
    [junit] Running org.biojava.bio.seq.FeatureFilterTest
    [junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 1.946 sec
    [junit] Running org.biojava.bio.seq.FilterUtilsTest
    [junit] Tests run: 23, Failures: 0, Errors: 0, Time elapsed: 0.378 sec
    [junit] Running org.biojava.bio.seq.NewSimpleAssemblyTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 2.312 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 9.07 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 8.625 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 2.688 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 21.112 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 8.529 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 5.402 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 2.72 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 9.051 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 9.586 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 9.153 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 18.396 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 5.431 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 30.119 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 3.418 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 3.174 sec
    [junit] Running org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 3.893 sec
    [junit] Running org.biojava.bio.program.indexdb.IndexToolsTest
    [junit] Tests run: 6, Failures: 0, Errors: 0, Time elapsed: 3.807 sec
    [junit] Running org.biojava.bio.program.phred.PhredToolsTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.645 sec
    [junit] Running org.biojava.bio.dist.DistSerTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 2.347 sec
    [junit] Running org.biojava.bio.dist.DistributionTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 1.64 sec
    [junit] Running org.biojava.bio.dist.DistributionToolsTest
    [junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 2.026 sec
    [junit] Running org.biojava.bio.dp.EmissionStateEventTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.643 sec
    [junit] Running org.biojava.bio.dp.MarkovModelEventTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 1.694 sec
    [junit] Running org.biojava.bio.molbio.RestrictionEnzymeManagerTest
    [junit] Tests run: 5, Failures: 0, Errors: 0, Time elapsed: 1.921 sec
    [junit] Running org.biojava.bio.molbio.RestrictionEnzymeTest
    [junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 1.924 sec
    [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest
    [junit] Tests run: 5, Failures: 0, Errors: 0, Time elapsed: 2.157 sec
    [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest
    [junit] Tests run: 5, Failures: 0, Errors: 0, Time elapsed: 2.256 sec
    [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest
    [junit] Tests run: 6, Failures: 0, Errors: 0, Time elapsed: 2.168 sec
    [junit] Running org.biojava.bio.AnnotationTypeTest
    [junit] Tests run: 7, Failures: 0, Errors: 0, Time elapsed: 0.177 sec
    [junit] Running org.biojava.bio.proteomics.MassCalcTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 2.113 sec
    [junit] Running org.biojava.bio.MergeAnnotationTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.087 sec
    [junit] Running org.biojava.bio.alignment.FlexibleAlignmentTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.025 sec
    [junit] Running org.biojava.ontology.ReasoningDomainTest
    [junit] Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 15.219 sec
    [junit] Running org.biojava.ontology.TripleImplTest
    [junit] Tests run: 8, Failures: 0, Errors: 0, Time elapsed: 0.138 sec
    [junit] Running org.biojava.ontology.TermImplTest
    [junit] Tests run: 6, Failures: 0, Errors: 0, Time elapsed: 0.163 sec
    [junit] Running org.biojava.ontology.OntologyTest
    [junit] Tests run: 21, Failures: 0, Errors: 0, Time elapsed: 0.166 sec
    [junit] Running org.biojava.utils.walker.WalkerFactoryTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.406 sec
    [junit] Running org.biojava.utils.walker.WalkerTest
    [junit] Tests run: 4, Failures: 0, Errors: 0, Time elapsed: 0.494 sec
    [junit] Running org.biojava.utils.lsid.LifeScienceIdentifierTest
    [junit] Tests run: 10, Failures: 0, Errors: 0, Time elapsed: 0.122 sec
    [junit] Running org.biojava.utils.ListToolsTest
    [junit] Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 0.028 sec

BUILD SUCCESSFUL
Total time: 6 minutes 51 seconds


More information about the biojava-dev mailing list